Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq1190 517 1e-141 seq13 407 2e-108 seq14 324 2e-83 seq11 311 1e-79 seq2 163 4e-35 >seq1190 Length=152218 Score = 517 bits (572), Expect = 1e-141 Identities = 687/952 (72%), Gaps = 4/952 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| |||| ||||| || || ||||| | ||||||||| ||||||||||| | ||| Sbjct 346 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 405 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 |||| ||| ||||| ||| |||| ||| ||| | ||| | | |||||| || | Sbjct 406 GCTCGGTTAATAATA--TCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGG 463 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||||||| || || || || || | ||| || ||||| |||| ||||| | || || | Sbjct 464 ATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAA 523 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAA 8128 |||||| || ||| || || | | ||| | |||||| || | | | | ||||| | Sbjct 524 ACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGA 583 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 | |||||| |||||||| |||| ||||| || ||||||||||| ||||||||||||| Sbjct 584 AACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGG 643 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | ||||| ||||||||||| | ||||| | || ||| || | ||| || || || | Sbjct 644 TTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC 703 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 704 TGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATA 763 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 ||| ||||| ||| ||| || || |||||||||||||| |||||||| || || |||| Sbjct 764 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATA 823 Query 8369 CGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCT 8428 | | ||| || || || ||||| ||||| ||||||||||| ||||| || || |||| Sbjct 824 CAATCATAAAATTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCT 883 Query 8429 GACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTA 8488 |||||| ||||| | ||||| || || ||| || | || ||||| |||||| | Sbjct 884 GACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAA 943 Query 8489 CACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAG 8548 || ||||| || | |||||| || || | | ||||||| | |||||||| Sbjct 944 CAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGC 1003 Query 8549 CAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACC 8608 || | |||| | |||||| | | || | | ||| ||||| ||||| || |||| Sbjct 1004 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACC 1063 Query 8609 ACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAG 8668 | ||||| | | || ||||||||||| ||||| ||||| || || ||||| |||| Sbjct 1064 ATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAG 1123 Query 8669 ATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTT 8728 |||| | |||||||| ||||| ||||||||||| | | || || | |||||| | Sbjct 1124 TAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCT 1183 Query 8729 CACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAG 8788 |||||||||| || ||||| || || || ||||||||||| || | ||||| || || Sbjct 1184 CACGAATACCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACAGAAG 1243 Query 8789 CAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 || | || || ||||||||| | ||| |||||||| || | ||||| Sbjct 1244 TTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAG 1295 >seq13 Length=45874162 Score = 407 bits (450), Expect = 2e-108 Identities = 625/892 (70%), Gaps = 22/892 (2%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| |||| ||||| || || ||||| | ||||||||| ||||||||||| | ||| Sbjct 7359075 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 7359016 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 |||| ||| ||||| ||| |||| ||| ||| | ||| | | |||||| || | Sbjct 7359015 GCTCGGTTAATAATA--TCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGG 7358958 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||||||| || || || || || | ||| || ||||| ||| ||||| | || || | Sbjct 7358957 ATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGGTAA 7358898 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAA 8128 |||||| || ||| | || | | ||| | |||||| || | | | | ||||| | Sbjct 7358897 ACCAAATACCTACTATAGGCCAAGCAGCAAAGAAGAAATGTAAAGAACGAGAATTGTTGA 7358838 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 | |||||| |||||||| |||| ||||| || ||||||||| | ||||||||||||| Sbjct 7358837 AACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAACTACAATATTATAGG 7358778 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | || || ||||||||||| | ||||| | || ||| || | ||| || || || | Sbjct 7358777 TTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC 7358718 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | | | || || || ||| | ||||||||||| || | || || ||||| | Sbjct 7358717 TGATCAAACTAAAAGTTACCAAGGAATCATGCATAGCACTAAATAAGGAGCCGCCGAATA 7358658 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 ||| ||||| | ||| || || |||||||||||||| ||||||| || || |||| Sbjct 7358657 CACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATA 7358598 Query 8369 CGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCT 8428 | | ||| || || | ||||| ||||| ||||||||||| ||||| || || |||| Sbjct 7358597 CAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCT 7358538 Query 8429 GACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTA 8488 |||||| ||||| | ||||| || || || ||| | ||| | Sbjct 7358537 GACCAATAGGATAGATCAAGAAAACAGC---AGTAGCGG---------------CTGCAA 7358496 Query 8489 CACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAG 8548 || || || || | |||||| || || | | ||||||| | |||||||| Sbjct 7358495 CAGCAATTCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGC 7358436 Query 8549 CAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACC 8608 || | |||| | |||||| | |||| | | ||| ||||| |||||||| |||| Sbjct 7358435 AAGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATATAACC 7358376 Query 8609 ACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAG 8668 | ||||| | | || ||||||||||| ||||| ||||| || || ||||| |||| Sbjct 7358375 ATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAG 7358316 Query 8669 ATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTT 8728 |||| | |||||||| ||||| ||||||||||| | | || || | |||||| | Sbjct 7358315 TAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCT 7358256 Query 8729 CACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 |||||||||| || ||||| || | || ||||||||||| | | |||||| Sbjct 7358255 CACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATGATAAA 7358204 >seq14 Length=49042192 Score = 324 bits (358), Expect = 2e-83 Identities = 437/609 (72%), Gaps = 0/609 (0%) Strand=Plus/Minus Query 8079 TACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAACGATGCATA 8138 ||| ||||| | | ||| | |||||| || | | | || ||||| || |||||| Sbjct 41706476 TACTACTGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATA 41706417 Query 8139 CTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTC 8198 |||||||| |||| ||||| || ||||||||||| |||||||||||||| ||||| || Sbjct 41706416 TTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTC 41706357 Query 8199 TTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGA 8258 ||||||||| | ||||| | || ||| || | ||| || || || ||||| | | | Sbjct 41706356 TTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACA 41706297 Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTAC 8318 ||| || || || ||||| |||||| ||||||| || || || ||||| | ||| ||||| Sbjct 41706296 AGAAGTTACCAAGGAACCATGCATATCACTGAATAGGGAGCCGCCGAATACACCAGCTAC 41706237 Query 8319 CCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAA 8378 ||| ||| || || |||||||||||||| |||||||| || || ||||| | ||| || Sbjct 41706236 ACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAA 41706177 Query 8379 GTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438 || || ||||| |||| ||||||||||| ||||| || || |||||||||| || Sbjct 41706176 ATTGAAAGTACCTAAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGG 41706117 Query 8439 ATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCA 8498 ||| | ||||| || || ||| || | || ||||| |||||| ||| ||| | Sbjct 41706116 ATAGATAAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGA 41706057 Query 8499 TGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCC 8558 || | |||||| || || | | ||||||| | |||||||| || | || Sbjct 41706056 AGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACACC 41705997 Query 8559 AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAA 8618 || | |||||| | | || | | ||| ||| | |||||||| ||||| ||||| | Sbjct 41705996 AAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAAT 41705937 Query 8619 TGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGAC 8678 | || ||||||||||| ||||| ||||| || || ||||| |||| |||| | Sbjct 41705936 AGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAAT 41705877 Query 8679 AGCACCAGA 8687 |||||||| Sbjct 41705876 GGCACCAGA 41705868 >seq11 Length=34766867 Score = 311 bits (344), Expect = 1e-79 Identities = 409/567 (72%), Gaps = 0/567 (0%) Strand=Plus/Plus Query 8094 AGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAACGATGCATACTGGAAGATTAATCT 8153 ||| | |||||| || | | | || ||||| || |||||| |||||||| |||| Sbjct 15042322 AGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATATTGGAAGATCAATCG 15042381 Query 8154 ACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATA 8213 ||||| || ||||||||||| |||||||||||||| ||||| ||||||||||| | || Sbjct 15042382 GCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGACCAAATCTGTA 15042441 Query 8214 ACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGA 8273 ||| | || ||| || | ||| || || || ||||| | | |||| || || || || Sbjct 15042442 ACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAAGAAGTTACCAAGGA 15042501 Query 8274 ACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAA 8333 ||| |||||||||||||| || || || ||||| | ||| ||||| ||| ||| || || Sbjct 15042502 ACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAA 15042561 Query 8334 AGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGA 8393 |||||||||||||| |||||||| || || ||||| | ||| || || || ||||| | Sbjct 15042562 TGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTACCTAA 15042621 Query 8394 AATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACAC 8453 ||| | ||||||||| ||||| || || |||||||||| ||||| | ||||| || Sbjct 15042622 AATTCTTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAAC 15042681 Query 8454 TGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAA 8513 || ||| || | || ||||| |||||| ||| ||| | || | ||| || || Sbjct 15042682 AGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAAGGACGCATGCCCAA 15042741 Query 8514 GCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAA 8573 || | | ||||||| | |||||||| || | |||| | |||||| | Sbjct 15042742 ACGAAAACTAAGTTCCCACTCACACCCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAG 15042801 Query 8574 GATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCA 8633 | || | | ||| ||||| ||| |||| ||||| ||||| | | || |||||||| Sbjct 15042802 AACAATTAGTTCATAAGGACCACCGCTATATAACCATTCATCAACAGATGCCGCTTCCCA 15042861 Query 8634 AATGGGATAGAAGTGTAATCCAATAGC 8660 ||| ||||| ||||| || || ||||| Sbjct 15042862 AATAGGATAAAAGTGCAAACCTATAGC 15042888 >seq2 Length=48577505 Score = 163 bits (180), Expect = 4e-35 Identities = 192/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 8197 TCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGA 8256 ||||||||||| | ||||| | || ||| || | ||| || || || ||||| | | Sbjct 24951259 TCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 24951318 Query 8257 GAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCT 8316 | | || || || ||||| | |||||||||||| || || || ||||| | ||| ||| Sbjct 24951319 CTAAAAGTTACCAAGGAACCATACATAGCACTGAATAGGGAGCCGCCGAATACACCAGCT 24951378 Query 8317 ACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATG 8376 || ||| ||| || || |||||||||||||| ||||||| || || ||||| | ||| Sbjct 24951379 ACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATA 24951438 Query 8377 AAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAAT 8436 || || || ||| | ||||| ||||||||||| ||||| || || |||||||||| Sbjct 24951439 AAATTGAAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATA 24951498 Query 8437 GGATATACTAAGAACACTGC 8456 ||||| | ||||| || || Sbjct 24951499 GGATAGATCAAGAAAACAGC 24951518 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 8143 AAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGA 8202 ||||| |||| ||||| || ||||||||||| |||||||||||||| ||||| |||||| Sbjct 20536183 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGA 20536124 Query 8203 CCAAA 8207 ||||| Sbjct 20536123 CCAAA 20536119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615853231348520