Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1190 527 2e-145 seq13 408 1e-109 seq14 325 1e-84 seq11 313 7e-81 seq2 113 1e-20 seq15 86.0 2e-12 >seq1190 Length=152218 Score = 527 bits (584), Expect = 2e-145 Identities = 728/1010 (72%), Gaps = 10/1010 (1%) Strand=Plus/Minus Query 41213 AGAGAGAATGCCT--GGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTT 41270 |||| ||| |||| ||| | || ||| |||| | ||| || | || ||||||| Sbjct 1351 AGAGCGAAAGCCTATGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTT 1292 Query 41271 ATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTT 41329 | | |||||||| || || | |||||||| | | | ||| |||| || || ||| Sbjct 1291 ACATTGGATGGTTTGGTGTTTTGATGATTCC-TACTTTATTGACCGCAACTTCTGTATTT 1233 Query 41330 ATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCT 41389 |||||||| ||| ||| || || || || || || ||||| || || || || || || Sbjct 1232 ATTATCGCTTTTATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCT 1173 Query 41390 GGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCC 41449 || || || | ||||| ||||| ||||| || || ||| | |||| | | || Sbjct 1172 GGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCT 1113 Query 41450 ATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAAC 41509 || || | ||||| || || ||||||||||| || | ||||||||||| | |||||| Sbjct 1112 ATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATACAAC 1053 Query 41510 GGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCT-TTGCTTACATGGG 41568 |||||||| | |||| | || | |||||| | |||| || ||||| ||||||| Sbjct 1052 GGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCT-ACATGGG 994 Query 41569 ACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTC 41628 || |||||||||||||| | ||| | || ||| | || ||||| |||||| || || Sbjct 993 GCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTC 934 Query 41629 TGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTT 41688 |||||||| || || || |||||||| ||| | | ||||| |||| ||||| || Sbjct 933 AGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTT 874 Query 41689 TTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGC 41748 ||| |||| |||||| | || || || || || ||||| | ||| | || || ||||| Sbjct 873 TTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTTCAATTTTATGATTGTATTTCAGGC 814 Query 41749 TGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGG 41808 |||||| ||||||||||||||||| ||||||||| | ||||| || || ||||| || || Sbjct 813 TGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGG 754 Query 41809 GAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGAC 41868 | ||| ||||||||| ||| | |||| || || | || | || || || Sbjct 753 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCAC 694 Query 41869 TGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATAT 41928 ||| | | || || | ||||||| ||||||||||||||||| || || ||||| Sbjct 693 AGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATAT 634 Query 41929 TGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTC 41988 ||| |||||||| || |||||||| || | |||||||||||||| || || || ||||| Sbjct 633 TGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTC 574 Query 41989 CCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCT 42048 ||| | | |||||||| | ||||| |||||||| ||||||||||||||| | |||| Sbjct 573 TCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTAC--CGCT 516 Query 42049 TGGCGTGTC--TACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTA 42106 | || || || |||||||||||||| ||||||||||| || |||||||| | | Sbjct 515 TTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 456 Query 42107 GCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGC 42166 | | | | || | || || || ||||||||||| ||| ||||||| || |||||||| Sbjct 455 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGT 396 Query 42167 TTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 | || || |||||||| || || || || || ||||| || || || || Sbjct 395 ATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 346 >seq13 Length=45874162 Score = 408 bits (452), Expect = 1e-109 Identities = 630/895 (70%), Gaps = 28/895 (3%) Strand=Plus/Plus Query 41327 TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTC 41386 ||||| ||| | ||| ||| || || | || || || ||||| || || || || || Sbjct 7358204 TTTATCATCACTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTT 7358263 Query 41387 GCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAAT 41446 |||| || || | ||||| ||||| ||||| || || ||| | |||| | | Sbjct 7358264 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 7358323 Query 41447 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTAC 41506 || || || | ||||| || || ||||||||||| || | ||||||||||| | || Sbjct 7358324 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATAT 7358383 Query 41507 AACGGCGGTCCATTCCAACTCACCGTATTC--CACTTCCTCATTGGCGTCT-TTGCTTAC 41563 ||||||||||| | |||| | ||||| |||||| | |||| || ||||| || Sbjct 7358384 AACGGCGGTCCTTATGAACTAAT--TATTCTACACTTCTTACTTGGTGTAGCTTGCT-AC 7358440 Query 41564 ATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCG 41623 ||||| || |||||||||||||| | ||| | || ||| | || || || |||||| Sbjct 7358441 ATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGAATTGCTGTTGCA 7358500 Query 41624 TACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGC 41683 |||||| |||||||| ||| | | ||||| |||| ||||| Sbjct 7358501 ---------------GCCGCT---ACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGA 7358542 Query 41684 TCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTC 41743 ||||| |||| |||||| | || || || || || | ||| | ||| | || || Sbjct 7358543 AGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTT 7358602 Query 41744 CAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTT 41803 |||||| |||| ||||||||||||||||| ||||||||| ||| ||| || || ||||| Sbjct 7358603 CAGGCTAAGCATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTC 7358662 Query 41804 GGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAG 41863 || || || || ||||||||| | | | |||| || | | || | || Sbjct 7358663 GGCGGCTCCTTATTTAGTGCTATGCATGATTCCTTGGTAACTTTTAGTTTGATCAGGGAA 7358722 Query 41864 ACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTAC 41923 || || ||| | | || || | ||||||| |||||||||||||| || || || Sbjct 7358723 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAGGAAACCTAT 7358782 Query 41924 AATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAAT 41983 |||||||| | |||||| || |||||||| || | |||||||||||||| || || || Sbjct 7358783 AATATTGTAGTTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAAC 7358842 Query 41984 AATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCT 42043 ||||| ||| | | |||||||| ||||||| |||||| | ||||||||||||||| | Sbjct 7358843 AATTCTCGTTCTTTACATTTCTTCTTTGCTGCTTGGCCTATAGTAGGTATTTGGTTTAC- 7358901 Query 42044 GCGCTTGGCGTGTC--TACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTC 42101 ||||| || || || |||||||||||||| ||||||||||| || |||||||| Sbjct 7358902 -CGCTTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCG 7358960 Query 42102 TGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACC 42161 | | | | | | || | || || || ||||||||||| ||| ||||||| || |||| Sbjct 7358961 TAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACC 7359020 Query 42162 TTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 |||| | || || |||||||| || || || || || ||||| || || || || Sbjct 7359021 TTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 7359075 Score = 82.4 bits (90), Expect = 2e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 ||||| || || ||||||||||| | | ||||||||||| | |||||||||||||| Sbjct 24997014 CACTTTTATCCTATTTGGGAAGCGACATCTGTTGATGAATGGTTATACAACGGCGGTCCT 24996955 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTACATGGGACGAGAGTG 41577 | |||| | || | |||||| | |||| || |||| |||||||| || ||||| Sbjct 24996954 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TACATGGGGCGTGAGTG 24996896 Query 41578 GGAACTTAG 41586 | ||||||| Sbjct 24996895 GAAACTTAG 24996887 >seq14 Length=49042192 Score = 325 bits (360), Expect = 1e-84 Identities = 417/572 (73%), Gaps = 2/572 (0%) Strand=Plus/Plus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 ||||| || || ||||||||||| || | ||||||||||| | || ||||||| ||| Sbjct 41705907 CACTTTTATCCTATTTGGGAAGCGGCATCTATTGATGAATGGTTATATAACGGCGATCCT 41705966 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTACATGGGACGAGAGTG 41577 | |||| | || | |||||| | |||| || |||| |||||||| || ||||| Sbjct 41705967 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TACATGGGGCGTGAGTG 41706025 Query 41578 GGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGT 41637 ||||||||| | ||| | || ||| | || | ||| |||||| || || |||||||| Sbjct 41706026 GGAACTTAGTTTTCGTTTGGGTATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCTGT 41706085 Query 41638 CGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGC 41697 || || || |||||||| ||| || | ||||| |||| ||||| ||||| |||| Sbjct 41706086 TGCAGCCGCTACTGCTGTTTTCTTTATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGG 41706145 Query 41698 TATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAA 41757 |||||| | || || | || || ||||| | ||| | || || ||||||||||| || Sbjct 41706146 TATGCCTCTAGGAATTTTAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAA 41706205 Query 41758 TATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTT 41817 ||||||||||||||| ||||||||| | ||||| || || ||||| || || | || Sbjct 41706206 TATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 41706265 Query 41818 CTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGT 41877 | || |||||| ||| | |||| || || | | || | || || || ||| | | Sbjct 41706266 CAGTGATATGCATGGTTCCTTGGTAACTTCTTGTTTGATCAGGGAAACCACAGAAAATGA 41706325 Query 41878 TTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGC 41937 || || | ||||||| ||||||||||||||||| || || |||||||| ||||| Sbjct 41706326 ATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGC 41706385 Query 41938 TCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCT 41997 ||| || |||||||| || | |||||||||||||| || || || |||| ||| | | Sbjct 41706386 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTGTCGTTCTTT 41706445 Query 41998 TCATTTCTTTCTTGCTGCCTGGCCTGTTGTAG 42029 |||||||| | ||||| ||||| || |||| Sbjct 41706446 ACATTTCTTCTTAGCTGCTTGGCCAGTAGTAG 41706477 >seq11 Length=34766867 Score = 313 bits (346), Expect = 7e-81 Identities = 414/572 (72%), Gaps = 2/572 (0%) Strand=Plus/Minus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 ||||| || || ||||||||||| || | ||||||||||| | || | ||| ||||| Sbjct 15042876 CACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAGCGGTGGTCCT 15042817 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCT-TTGCTTACATGGGACGAGAGTG 41577 | |||| | || | |||||| | |||| || ||||| ||||||| | ||||| Sbjct 15042816 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCT-ACATGGGGTGTGAGTG 15042758 Query 41578 GGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGT 41637 ||||||||| | ||| | || ||| | || | ||| |||||| || || |||||||| Sbjct 15042757 GGAACTTAGTTTTCGTTTGGGCATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCTGT 15042698 Query 41638 CGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGC 41697 || || || |||||||| ||| | | ||||| |||| ||||| ||||| |||| Sbjct 15042697 TGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGG 15042638 Query 41698 TATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAA 41757 |||||| | | || | || || ||||| | ||| | || || ||||||||||| || Sbjct 15042637 TATGCCTCTAAGAATTTTAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAA 15042578 Query 41758 TATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTT 41817 ||||||||||||||| ||||||||| | ||||| || || ||||| || || | || Sbjct 15042577 TATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 15042518 Query 41818 CTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGT 41877 | ||||||||| ||| | |||| || || | | || | || || || ||| | | Sbjct 15042517 CAGTGCTATGCATGGTTCCTTGGTAACTTCTTGTTTGATCAGGGAAACCACAGAAAATGA 15042458 Query 41878 TTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGC 41937 || || | ||||||| ||||||||||||||||| || || |||||||| ||||| Sbjct 15042457 ATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGC 15042398 Query 41938 TCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCT 41997 ||| || |||||||| || | |||||||||||||| || || || |||| ||| | | Sbjct 15042397 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTGTCGTTCTTT 15042338 Query 41998 TCATTTCTTTCTTGCTGCCTGGCCTGTTGTAG 42029 |||||||| | ||||| |||| ||| |||| Sbjct 15042337 ACATTTCTTCTTAGCTGCTTGGCTTGTAGTAG 15042306 >seq2 Length=48577505 Score = 113 bits (124), Expect = 1e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 41645 GCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCC 41704 || |||||||| ||| | | ||||| |||| ||||| ||||| |||| |||||| Sbjct 24951524 GCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCT 24951465 Query 41705 TTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTT 41764 | || || || | || ||||| | ||| | || || |||||| |||| ||||||||| Sbjct 24951464 CTAGGAATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTT 24951405 Query 41765 ATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCT 41824 |||||||| ||||||||| | ||||| || || ||||| || || | ||| |||| Sbjct 24951404 ATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCT 24951345 Query 41825 ATGCACGGTAGCCTGGTCAC 41844 ||| | ||| | |||| || Sbjct 24951344 ATGTATGGTTCCTTGGTAAC 24951325 >seq15 Length=51756343 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| |||||||||||| |||| || | |||||||| | | ||| || |||||| Sbjct 19465063 GGTTACATATTTGGTCAAGAGAAAGAAACCAATAATATTGTAGTCGTTCATGGTTATTTT 19465004 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || | | || ||||||||||| || || || ||||| ||| | | |||||||| ||| Sbjct 19465003 GGCCCATTGATATTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTACTT 19464944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146212332071464