Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1190 448 1e-121 seq13 338 2e-88 seq14 248 3e-61 seq11 241 4e-59 >seq1190 Length=152218 Score = 448 bits (496), Expect = 1e-121 Identities = 697/987 (71%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| || || || || |||||||||||||| || ||||| ||||| | || |||||| Sbjct 346 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 405 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 |||||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 406 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 465 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| |||| |||||| | || || | | Sbjct 466 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 525 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | |||||||| | |||||| || || ||| Sbjct 526 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 585 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| ||||||||||| || Sbjct 586 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTT 645 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||||| | || || | ||| || | | ||||| ||||| Sbjct 646 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 705 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| ||| || | || ||||| || Sbjct 706 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 765 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||| ||||| || |||||||| || || || ||||| Sbjct 766 CCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 825 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | |||||| || |||||||| || || || |||||||| ||||| ||| || || || Sbjct 826 ATCATAAAATTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 885 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | |||||| | ||||| || || ||| || | | || |||| |||||||||| Sbjct 886 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACA 945 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC 26535 ||||| || | ||| || | | || |||||||||| | ||| ||| | || Sbjct 946 GCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCC--CATGTAGC 1003 Query 26536 T-GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCC 26594 ||||| || | ||||||||| | | ||| |||| ||| || ||||| ||||||| || Sbjct 1004 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACC 1063 Query 26595 ACTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 | || || | | |||| |||||||| || || ||||| || | || || || ||| Sbjct 1064 ATTCATCAACAGATGCC-GCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAA 1122 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | || | | || || || || ||||||||||| || | || || || ||||| ||| Sbjct 1123 GTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 1182 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGT 26772 ||||| || ||||| |||||||| || || || || || || || | ||||| ||| | Sbjct 1183 TCACGAATACCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACA-GA 1241 Query 26773 AGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 ||| || | | ||| || ||||| | || || |||||||| | || ||||| || Sbjct 1242 AGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 1301 Query 26833 CTCAGTACTTGTAACCCACTCACAAAA 26859 || || || || | ||| | ||| || Sbjct 1302 TTCGGTGCTGGTTATCCAGTTACAGAA 1328 >seq13 Length=45874162 Score = 338 bits (374), Expect = 2e-88 Identities = 608/883 (69%), Gaps = 28/883 (3%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| || || || || |||||||||||||| || ||||| ||||| | || |||||| Sbjct 7359075 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 7359016 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 |||||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 7359015 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 7358956 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| ||| |||||| | || || | | Sbjct 7358955 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGGTAAAC 7358896 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || | ||||||| ||||| |||||||| | |||||| || || ||| Sbjct 7358895 CAAATACCTACTATAGGCCAAGCAGCAAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 7358836 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||| | ||||||||||| || Sbjct 7358835 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAACTACAATATTATAGGTT 7358776 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTT--CTG 26234 || || ||||| ||||| | || || | ||| || | | ||||| |||| ||| Sbjct 7358775 TCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 7358716 Query 26235 CAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAA 26294 || | | |||| ||||| | ||||||||| || | | || ||||| | Sbjct 7358715 ATCAAACTAA--AAGTTACCAAGGAATCATGCATAGCACTAAATAAGGAGCCGCCGAATA 7358658 Query 26295 CCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATA 26354 | ||||| ||| | ||| || ||||| ||||| || |||||||| | || || |||| Sbjct 7358657 CACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATA 7358598 Query 26355 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTT 26414 | | |||||| || ||||||| || || || |||||||| ||||| ||| || || | Sbjct 7358597 CAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCT 7358538 Query 26415 GTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAA 26474 | || | |||||| | ||||| || || || |||| ||||| Sbjct 7358537 GACCAATAGGATAGATCAAGAAAACAGC---AGTAGCGG---------------CTGCAA 7358496 Query 26475 CAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT- 26533 || || || || | ||| || | | || |||||||||| | ||| ||| | Sbjct 7358495 CAGCAATTCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCC--CATGTA 7358438 Query 26534 GC-TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAG 26592 || ||||| || | ||||||||| | ||||| |||| ||| || ||||| || |||| Sbjct 7358437 GCAAGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATATAA 7358378 Query 26593 CCACTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAG 26651 ||| || || | | |||| |||||||| || || ||||| || | || || || || Sbjct 7358377 CCATTCATCAACAGATGCC-GCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAG 7358319 Query 26652 AGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTG 26711 | | || | | || || || || ||||||||||| || | || || || ||||| | Sbjct 7358318 AAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 7358259 Query 26712 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAA 26754 ||||||| || ||||| |||||||| | || || || || || Sbjct 7358258 GCTCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAA 7358216 >seq14 Length=49042192 Score = 248 bits (274), Expect = 3e-61 Identities = 402/572 (70%), Gaps = 6/572 (1%) Strand=Plus/Minus Query 26066 ACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATAC 26125 || || ||||||| ||| | |||||||| | |||||| | || || ||||| ||||| Sbjct 41706475 ACTACTGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATAT 41706416 Query 26126 TGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCT 26185 || || || |||| ||||| || || || ||||| ||||||||||| || ||||| ||| Sbjct 41706415 TGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCT 41706356 Query 26186 TGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAG 26245 || ||||| | || || | ||| || | | ||||| ||||| || | | Sbjct 41706355 TGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAA 41706296 Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 ||||| ||||| || |||||| || ||| || | || ||||| || ||||| ||| Sbjct 41706295 GAAGTTACCAAGGAACCATGCATATCACTGAATAGGGAGCCGCCGAATACACCAGCTACA 41706236 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || ||||| ||||| || |||||||| || || || ||||| | |||||| Sbjct 41706235 CCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAA 41706176 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425 || |||||||| | || || |||||||| ||||| ||| || || || || | |||| Sbjct 41706175 TTGAAAGTACCTAAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGA 41706116 Query 26426 TAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCAT 26485 || | ||||| || || ||| || | | || |||| |||||||||| ||| | Sbjct 41706115 TAGATAAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAA 41706056 Query 26486 GGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC-TGCTACTC 26543 || | ||| || | | || |||||||||| | ||| ||| | || ||||| | Sbjct 41706055 GGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCC--CATGTAGCAAGCTACAC 41705998 Query 26544 CTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCA 26603 | | ||||||||| | | ||| |||| ||| || |||| || |||| ||| || || | Sbjct 41705997 CAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAA 41705938 Query 26604 GTG-TGCCAGCTTCCCAGATCGGGTAAAAATG 26634 | |||| |||||||| || || ||||| || Sbjct 41705937 TAGATGCC-GCTTCCCAAATAGGATAAAAGTG 41705907 >seq11 Length=34766867 Score = 241 bits (266), Expect = 4e-59 Identities = 396/565 (70%), Gaps = 6/565 (1%) Strand=Plus/Plus Query 26073 GCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAA 26132 |||||| ||| | |||||||| | |||||| | || || ||||| ||||| || || | Sbjct 15042315 GCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATATTGGAAGA 15042374 Query 26133 TTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAA 26192 | |||| ||||| || || || ||||| ||||||||||| || ||||| ||||| |||| Sbjct 15042375 TCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGACCAA 15042434 Query 26193 ACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAA 26252 | | || || | ||| || | | ||||| ||||| || | | ||||| | Sbjct 15042435 ATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAAGAAGTTA 15042494 Query 26253 CCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCA 26312 |||| || ||||||||| ||| || | || ||||| || ||||| ||||| || Sbjct 15042495 CCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACA 15042554 Query 26313 TATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAG 26372 | || ||||| ||||| || |||||||| || || || ||||| | |||||| || |||| Sbjct 15042555 TGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAG 15042614 Query 26373 TACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTA 26432 |||| | || | |||||||| ||||| ||| || || || || | |||||| | | Sbjct 15042615 TACCTAAAATTCTTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCA 15042674 Query 26433 AGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCA 26492 |||| || || ||| || | | || |||| |||||||||| ||| | || | || Sbjct 15042675 AGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAAGGACGCA 15042734 Query 26493 TTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC-TGCTACTCCTATTAA 26550 | || | | || |||||||||| | ||| ||| | || ||||| || | ||| Sbjct 15042735 TGCCCAAACGAAAACTAAGTTCCCACTCACACCC--CATGTAGCAAGCTACACCAAGTAA 15042792 Query 26551 GAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-TGC 26609 |||||| | | ||| |||| ||| || || || | |||| ||| || || | | ||| Sbjct 15042793 GAAGTGTAGAACAATTAGTTCATAAGGACCACCGCTATATAACCATTCATCAACAGATGC 15042852 Query 26610 CAGCTTCCCAGATCGGGTAAAAATG 26634 | |||||||| || || ||||| || Sbjct 15042853 C-GCTTCCCAAATAGGATAAAAGTG 15042876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147709910890720