Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq1190 452 1e-122 seq13 324 4e-84 seq14 214 5e-51 seq11 205 3e-48 seq2 86.0 2e-12 >seq1190 Length=152218 Score = 452 bits (500), Expect = 1e-122 Identities = 695/986 (70%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 ||||| |||||||| || || ||||| ||||| || ||||||||||||||||| || | Sbjct 345 AGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTT 404 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 || ||||| || ||||||||| ||| ||| || ||| | | || ||||| || Sbjct 405 AGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGA 464 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG 40711 ||||| || || |||||||| | ||| ||||||||||| ||||| | | ||||| Sbjct 465 TTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAA 524 Query 40712 CCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAA 40771 ||| || || | || || ||||| | | ||||| |||| | ||| ||||||||| Sbjct 525 CCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 584 Query 40772 TGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGT 40831 |||||||| || || | || ||||| ||||| || |||||||| || ||||| || Sbjct 585 ACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGT 644 Query 40832 CTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCG 40891 || | || |||||||| | || || | || |||||| |||| ||||| |||| Sbjct 645 TTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 704 Query 40892 AATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGAC 40951 || | ||||| || | | || ||||||||| || | | || || || || Sbjct 705 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATAC 764 Query 40952 GCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGAC 41011 || || || || | ||| || ||||| ||||| ||||| || || || || || || || Sbjct 765 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATAC 824 Query 41012 AAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTG 41071 || ||| || ||||| || || ||||||| |||||||||||| || || ||||| Sbjct 825 AATCATAAAATTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTG 884 Query 41072 ACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCAC 41131 ||| | ||||| | ||||| ||||| ||| |||| | ||||||| ||||| || Sbjct 885 ACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAAC 944 Query 41132 AAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGC 41191 | ||||| || | |||||| | | | ||||||||||| | || ||| Sbjct 945 AGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCA 1004 Query 41192 TGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCA 41251 ||||| || | ||| ||||| | ||||| |||| ||| || ||||||||||||| ||| Sbjct 1005 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCA 1064 Query 41252 CTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGC 41310 || || | | |||| |||||||| || || || || || | || || || ||| Sbjct 1065 TTCATCAACAGATGCC-GCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAG 1123 Query 41311 TCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCT 41370 | |||| | || ||||| || |||||||| || || | || || || ||||| |||| Sbjct 1124 TAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCT 1183 Query 41371 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTG 41429 |||| || ||||| |||||||| || || || || ||||| ||||| || || ||| | Sbjct 1184 CACGAATACCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACA-GAA 1242 Query 41430 GTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTG 41489 || || || | ||| | |||||||| | ||||||||||| || | ||| || || || Sbjct 1243 GTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTT 1302 Query 41490 TCGGTGCTAGTGACCCAGTTACAAAA 41515 |||||||| || | ||||||||| || Sbjct 1303 TCGGTGCTGGTTATCCAGTTACAGAA 1328 >seq13 Length=45874162 Score = 324 bits (358), Expect = 4e-84 Identities = 608/893 (68%), Gaps = 22/893 (2%) Strand=Plus/Minus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 ||||| |||||||| || || ||||| ||||| || ||||||||||||||||| || | Sbjct 7359076 AGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTT 7359017 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 || ||||| || ||||||||| ||| ||| || ||| | | || ||||| || Sbjct 7359016 AGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGA 7358957 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG 40711 ||||| || || |||||||| | ||| ||||||||||| ||||| | | ||||| Sbjct 7358956 TTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGGTAAA 7358897 Query 40712 CCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAA 40771 ||| || || | | || ||||| ||| ||||| |||| | ||| ||||||||| Sbjct 7358896 CCAAATACCTACTATAGGCCAAGCAGCAAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 7358837 Query 40772 TGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGT 40831 |||||||| || || | || ||||| ||||| || ||| |||| || ||||| || Sbjct 7358836 ACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAACTACAATATTATAGGT 7358777 Query 40832 CTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCG 40891 || | || |||||||| | || || | || |||||| |||| ||||| |||| Sbjct 7358776 TTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 7358717 Query 40892 AATGATTGAGGAAG-TAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGA 40950 || | ||| || ||||| | | ||||||||| ||| || | || || || | Sbjct 7358716 GATCAAACTAAAAGTTACCAAGGAAT-CATGCATAGCACTAAATAAGGAGCCGCCGAATA 7358658 Query 40951 CGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGA 41010 | || || || | | ||| || ||||| ||||| ||||| || || | || || || | Sbjct 7358657 CACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATA 7358598 Query 41011 CAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCT 41070 ||| ||| || ||| | || || ||||||| |||||||||||| || || |||| Sbjct 7358597 CAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCT 7358538 Query 41071 GACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCA 41130 |||| | ||||| | ||||| ||||| ||| || ||| | Sbjct 7358537 GACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGC------------------TGCAA 7358496 Query 41131 CAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATG 41190 || || || || | |||||| | | | ||||||||||| | || ||| Sbjct 7358495 CAGCAATTCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGC 7358436 Query 41191 CTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCC 41250 ||||| || | ||| ||||| | | ||| |||| ||| || |||||||| |||| || Sbjct 7358435 AAGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATATAACC 7358376 Query 41251 ACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAG 41309 | || || | | |||| |||||||| || || || || || | || || || ||| Sbjct 7358375 ATTCATCAACAGATGCC-GCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAA 7358317 Query 41310 CTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGC 41369 | |||| | || ||||| || |||||||| || || | || || || ||||| ||| Sbjct 7358316 GTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 7358257 Query 41370 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||||| || ||||| |||||||| | || || || ||||| | ||| || || Sbjct 7358256 TCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATGATAAA 7358204 >seq14 Length=49042192 Score = 214 bits (236), Expect = 5e-51 Identities = 385/560 (69%), Gaps = 2/560 (0%) Strand=Plus/Minus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||||| | | ||||| |||| | ||| | ||||||||| |||||||| || || | Sbjct 41706465 AAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATATTGGAAGATCA 41706406 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || ||||| ||||| || |||||||| || ||||| || || | || |||||||| Sbjct 41706405 ATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGACCAAATC 41706346 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAA 40911 | || || | || |||||| |||| ||||| |||| || | | ||||| || | Sbjct 41706345 TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAAGAAGTTACCA 41706286 Query 40912 GGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATAT 40971 | || |||||| || || | | || || || || || || || || | ||| | Sbjct 41706285 AGGAACCATGCATATCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGT 41706226 Query 40972 GGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTC 41031 | ||||| ||||| ||||| || || || || || || |||| ||| || ||||| || | Sbjct 41706225 GAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTAC 41706166 Query 41032 CACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGA 41091 | ||||||| |||||||||||| || || |||||||| | ||||| | |||| Sbjct 41706165 CTAAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATAAAGA 41706106 Query 41092 ATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATAC 41151 | ||||| ||| |||| | ||||||| ||||| ||| ||| | || | ||||| Sbjct 41706105 AAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAAGGACGCATAC 41706046 Query 41152 CTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGT 41211 | | | | ||||||||||| | || ||| ||||| || | ||| |||| Sbjct 41706045 CCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACACCAAGTAAGAAGT 41705986 Query 41212 GAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCT 41270 | | ||||| |||| ||| || ||||||| |||| ||| || || | | |||| ||| Sbjct 41705985 GTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAATAGATGCC-GCT 41705927 Query 41271 TCCCAGATTGGGTAGAAATG 41290 ||||| || || || || || Sbjct 41705926 TCCCAAATAGGATAAAAGTG 41705907 >seq11 Length=34766867 Score = 205 bits (226), Expect = 3e-48 Identities = 383/560 (68%), Gaps = 2/560 (0%) Strand=Plus/Plus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||||| | | ||||| |||| | ||| | ||||||||| |||||||| || || | Sbjct 15042318 AAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATATTGGAAGATCA 15042377 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || ||||| ||||| || |||||||| || ||||| || || | || |||||||| Sbjct 15042378 ATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGACCAAATC 15042437 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAA 40911 | || || | || |||||| |||| ||||| |||| || | | ||||| || | Sbjct 15042438 TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAAGAAGTTACCA 15042497 Query 40912 GGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATAT 40971 | || ||||||||| || | | || || || || || || || || | ||| | Sbjct 15042498 AGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGT 15042557 Query 40972 GGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTC 41031 | ||||| ||||| ||||| || || || || || || |||| ||| || ||||| || | Sbjct 15042558 GAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTAC 15042617 Query 41032 CACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGA 41091 | |||| || |||||||||||| || || |||||||| | ||||| | |||| Sbjct 15042618 CTAAAATTCTTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGA 15042677 Query 41092 ATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATAC 41151 | ||||| ||| |||| | ||||||| ||||| ||| ||| | || | ||| | Sbjct 15042678 AAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAAGGACGCATGC 15042737 Query 41152 CTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGT 41211 | | | | ||||||||||| | || ||| ||||| || | ||| |||| Sbjct 15042738 CCAAACGAAAACTAAGTTCCCACTCACACCCCATGTAGCAAGCTACACCAAGTAAGAAGT 15042797 Query 41212 GAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCT 41270 | | ||||| |||| ||| || || ||| | |||| ||| || || | | |||| ||| Sbjct 15042798 GTAGAACAATTAGTTCATAAGGACCACCGCTATATAACCATTCATCAACAGATGCC-GCT 15042856 Query 41271 TCCCAGATTGGGTAGAAATG 41290 ||||| || || || || || Sbjct 15042857 TCCCAAATAGGATAAAAGTG 15042876 >seq2 Length=48577505 Score = 86.0 bits (94), Expect = 2e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCA 40928 |||||| |||| ||||| |||| || | |||| || | | || | ||||||| Sbjct 24951289 GATTCATTTTCTGTGGTTTCCCTGATCAAACTAAAAGTTACCAAGGAACCATACATAGCA 24951348 Query 40929 GCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGA 40988 || | | || || || || || || || || | ||| || ||||| ||||| ||| Sbjct 24951349 CTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGA 24951408 Query 40989 ATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGC 41048 || || || | || || || |||| ||| || ||||| || | ||||||| |||| Sbjct 24951409 ATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAAATTCCTAGAGGC 24951468 Query 41049 ATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGC 41098 |||||||| || || |||||||| | ||||| | ||||| ||||| Sbjct 24951469 ATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAACAGC 24951518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143700367598994