Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq17 122 1e-22 seq13 109 8e-19 seq19 95.1 2e-14 >seq17 Length=41641078 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || ||||| |||||||| || || |||||||| ||| |||| Sbjct 3124928 ATGCAAATCTTTGTTAAGACTTTGACCGGAAAAACAATAACTTTAGAAGTTGAAAGTTCT 3124987 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||||| || ||||| || ||||| || || || ||||| || Sbjct 3124988 GATACCATCGATAACGTGAAGGCAAAGATACAGGACAAAGAGGGGATTCCACCAGACCAG 3125047 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || |||||||| |||||| | ||| | | ||||||||| Sbjct 3125048 CAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACTCTTGCTGATTATAAT 3125107 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || || ||| | || || ||||| ||||| || Sbjct 3125108 ATCCAGAAGGAGTCCACTCTGCATTTGGTGTTGAG 3125142 >seq13 Length=45874162 Score = 109 bits (120), Expect = 8e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || ||||| ||||| |||| ||||| ||| Sbjct 25114912 ATGCAAATCTTCGTCAAAACCCTAACCGGTAAAACGATTACGCTAGAGGTCGAGTCCTCT 25114853 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| ||| || || || || |||||||| || ||||| || Sbjct 25114852 GACACCATCGATAACGTGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCACCAGACCAG 25114793 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||||| || ||||||||||| |||||| | | ||||| ||| Sbjct 25114792 CAGCGCTTGATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTCGCCGATTACAAT 25114733 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || ||||| ||||||||||| | ||| Sbjct 25114732 ATTCAGAAAGAATCGACGCTTCATCTGGTG 25114703 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || |||||||||||||| || || || || || ||| |||| Sbjct 23087717 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAAACCATAACTTTGGAGGTTGAAAGTTCT 23087658 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || || || || || ||||| || || || || Sbjct 23087657 GATACCATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAG 23087598 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| || ||||| || |||||| | || || ||||||| ||| Sbjct 23087597 CAGAGGCTTATTTTTGCTGGGAAGCAACTGGAAGATGGTCGTACCTTGGCAGATTACAAT 23087538 Query 156003 AT 156004 || Sbjct 23087537 AT 23087536 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| ||||||||||| || || || || ||| ||| Sbjct 29045095 ATGCAGATCTTTGTGAAGACTTTGACAGGAAAAACTATCACCTTGGAGGTTGAAAGTTCA 29045036 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || |||||||| || || ||||| || || ||||| ||| Sbjct 29045035 GACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGTATCCCCCCAGACCAA 29044976 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||| || || ||| || ||| | | || || || Sbjct 29044975 CAGAGGTTGATCTTTGCTGGGAAGCAACTGGAGGATGGAAGGACTCTTGCTGACTACAAC 29044916 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 29044915 ATTCAGAAAGAGTCTACTCTTCA 29044893 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| || ||||| | || || || |||| Sbjct 29046007 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACAATTACCCTTGAGGTGGAGAGTTCT 29045948 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||| ||||| || || || || || ||| Sbjct 29045947 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCCGACCAA 29045888 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| |||| | ||| || |||||||| || ||| Sbjct 29045887 CAGAGACTGATCTTTGCTGGAAAGCAGCTTGAGGAT 29045852 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| || ||||| | || || || |||| Sbjct 29059713 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACAATTACCCTTGAGGTGGAGAGTTCT 29059654 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||| ||||| || || || ||||| ||| Sbjct 29059653 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAA 29059594 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||| | ||| || |||||||| || ||| Sbjct 29059593 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGAT 29059558 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||| ||||| || || || || || || ||| ||| Sbjct 23083249 ATGCAAATCTTCGTGAAGACTTTGACGGGAAAGACCATAACTTTGGAGGTTGAAAGCTCT 23083190 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || ||||| || || ||||| || || ||||| || Sbjct 23083189 GACACCATTGATAATGTGAAGGCAAAGATACAGGACAAGGAAGGTATTCCACCAGACCAG 23083130 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| || |||||||| |||||| | || | | ||||||||| Sbjct 23083129 CAGAGGCTTATTTTTGCAGGGAAGCAGCTGGAAGATGGGCGTACCCTGGCTGATTATAAT 23083070 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || || || | || || ||||| ||||| || Sbjct 23083069 ATCCAGAAGGAATCCACTCTGCATTTGGTGTTGAG 23083035 >seq19 Length=50746504 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || |||| || || || ||||| || || || ||| ||| Sbjct 29366816 ATGCAAATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCT 29366757 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| ||| || || || || || || || |||||||| || Sbjct 29366756 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCTCCAGATCAG 29366697 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || | ||| | |||||| | || || ||||||| ||| Sbjct 29366696 CAAAGGCTCATTTTTGCTGGGAGGCAATTAGAAGATGGTCGTACCTTGGCAGATTACAAT 29366637 Query 156003 AT 156004 || Sbjct 29366636 AT 29366635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731861104255600