Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq17 118 2e-21 seq13 109 1e-18 seq7 89.7 1e-12 >seq17 Length=41641078 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || || ||||| |||| ||| || ||||| |||||| Sbjct 3124701 ATGCCACCTCTTAAACGAAGAACCAAGTGTAAGGTAGACTCCTTCTGAATATTGTAATCA 3124642 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | ||||||||||||||| || || ||||| ||||| || Sbjct 3124641 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAATATCAACCTCTGCTGATCTGGA 3124582 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || |||||| || | || || ||||| Sbjct 3124581 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGATTCG 3124522 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| || || || | ||| || ||||| Sbjct 3124521 ACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 3124472 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| | || || ||||| | ||| | ||| || ||||||||||||| Sbjct 3125157 ATACCTCCACGAAGCCTCAACACCAAATGCAGAGTGGACTCCTTCTGGATATTATAATCA 3125098 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || || ||||||||||| | ||||| || || ||| Sbjct 3125097 GCAAGAGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGT 3125038 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || ||||| || || || ||| || | ||| || ||| Sbjct 3125037 GGAATCCCCTCTTTGTCCTGTATCTTTGCCTTCACGTTATCGATGGTATCAGAACTTTCA 3124978 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| || ||||| || || || || |||| ||| || ||||| Sbjct 3124977 ACTTCTAAAGTTATTGTTTTTCCGGTCAAAGTCTTAACAAAGATTTGCAT 3124928 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||| ||||| | || || ||||| ||||| | Sbjct 3125383 ACCACCACGAAGGCGAAGGACAAGATGCAAAGTGGATTCCTTCTGAATATTGTAATCTGC 3125324 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||||||| || |||||||| || | ||||| ||||| || || Sbjct 3125323 CAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCTGGAGG 3125264 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || || ||| ||| ||||| |||| ||| || ||| || Sbjct 3125263 GATACCTTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATAGTATCAGAGCTTTCCAC 3125204 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | |||||||| || || || | || || | |||||||||||| Sbjct 3125203 CTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCAT 3125156 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | || || || || | |||| || || ||| |||||||| Sbjct 3124929 ATGCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCT 3124870 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||||||||||||||| | ||||| || || || Sbjct 3124869 GCAAGGGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGG 3124810 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||| ||||| ||| | |||||| || Sbjct 3124809 GGGATACCCTCCTTATCTTGAATCTTGGCTTTCACATTGTCTATGGTATCTGAACTCTCC 3124750 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || || || || || || | || |||||||| Sbjct 3124749 ACCTCCAAGGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 3124700 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 192373 GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATT 192432 |||| | |||| || | |||||| || |||||||| | ||||| ||||||||||| || Sbjct 3129074 GTTCTTCCATCTTCAAGTTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCAGGTGGGATC 3129015 Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 ||||| || |||| || ||| ||| || || || || || || || || || Sbjct 3129014 CCTTCCTTTTCTTCAATCTTAGCTTTCACGTTTTCGATGCTGTCAGAAGACTCCACCTCA 3128955 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || ||||| | ||| |||||||| Sbjct 3128954 AGGGTGATAGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 3128911 >seq13 Length=45874162 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | | || || |||| || | ||||||||| |||||||| | ||| Sbjct 23083751 GATGTTGTAATCGGCAAGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCT 23083810 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || |||||||| || ||||| || ||||| || ||| |||||| || || | Sbjct 23083811 CTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTTACGTTGTCAATGGT 23083870 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||||| || || || || ||||| || || || || ||||| | |||||||| Sbjct 23083871 GTCGGAGGATTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTCACGAATATCTG 23083930 Query 192534 CAT 192536 ||| Sbjct 23083931 CAT 23083933 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | | || || |||| || | ||||||||| |||||||| | ||| Sbjct 23088219 GATGTTGTAATCGGCAAGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCT 23088278 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || |||||||| || ||||| || ||||| || ||| |||||| || || | Sbjct 23088279 CTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTTACGTTGTCAATGGT 23088338 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||||| || || || || ||||| || || || || ||||| | |||||||| Sbjct 23088339 GTCGGAGGATTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTTACGAATATCTG 23088398 Query 192534 CAT 192536 ||| Sbjct 23088399 CAT 23088401 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| || || | || | ||||| |||||| || || || |||| Sbjct 29044869 CCACCACGAAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCA 29044928 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || | | |||| |||| ||| || ||||||||||| || |||||||| || || || Sbjct 29044929 AGAGTCCTTCCATCCTCCAGTTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGG 29044988 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || |||||||| || |||||| || | ||||| ||| || Sbjct 29044989 ATACCTTCCTTGTCCTGTATTTTTGCCTTGACATTATCAATTGTGTCTGAACTTTCAACC 29045048 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || ||||| || || || || || | ||| |||||||| Sbjct 29045049 TCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 29045095 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| || || | || | ||||| |||||| || || || |||| Sbjct 29058803 CCACCACGAAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCA 29058862 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || | | |||| |||| ||| || ||||||||||| || |||||||| || || || Sbjct 29058863 AGAGTCCTTCCATCCTCCAGTTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGG 29058922 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || |||||||| || |||||| || | ||||| ||| || Sbjct 29058923 ATACCTTCCTTGTCCTGTATTTTTGCCTTGACATTATCAATTGTGTCTGAACTTTCAACC 29058982 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || ||||| || || || || || | ||| |||||||| Sbjct 29058983 TCCAAGGTGATAGTTTTCCCTGTCAAAGTCTTCACAAAGATCTGCAT 29059029 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || |||||| | ||| || | || | ||| || || | || || ||||| ||||| Sbjct 23087487 AAAACCACCGCGAAGGCGAAGGACGAGATGCAAGGTGGATTCCTTCTGAATATTGTAATC 23087546 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || || || |||| |||| ||| || |||||||| || | ||||| |||||||| Sbjct 23087547 TGCCAAGGTACGACCATCTTCCAGTTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCAGG 23087606 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || || || || || || || || |||||| || | ||| || ||| Sbjct 23087607 TGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTATCAATGGTATCAGAACTTTC 23087666 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| ||||| || || |||| ||| || ||||| Sbjct 23087667 AACCTCCAAAGTTATGGTTTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 23087717 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||| | || || || | || | || || || || |||||| Sbjct 23087944 ATACCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCA 23088003 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | ||||||||| ||||| || | ||||| ||||| || Sbjct 23088004 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGG 23088063 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || || || || |||||| || | || || ||||| Sbjct 23088064 GGGATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCC 23088123 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || || || || | ||| || ||||| Sbjct 23088124 ACCTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23088173 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| | || || ||||| | ||| | || || ||||||||||||| Sbjct 23083020 ATACCACCACGAAGCCTCAACACCAAATGCAGAGTGGATTCCTTCTGGATATTATAATCA 23083079 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || || || ||||| || | ||||| || || ||| Sbjct 23083080 GCCAGGGTACGCCCATCTTCCAGCTGCTTCCCTGCAAAAATAAGCCTCTGCTGGTCTGGT 23083139 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || ||||| || || |||||| || | || || ||| Sbjct 23083140 GGAATACCTTCCTTGTCCTGTATCTTTGCCTTCACATTATCAATGGTGTCAGAGCTTTCA 23083199 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||| || || || || || || | || || ||||| Sbjct 23083200 ACCTCCAAAGTTATGGTCTTTCCCGTCAAAGTCTTCACGAAGATTTGCAT 23083249 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || || || | || | || || || || |||||| Sbjct 23083476 ATGCCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCA 23083535 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | |||||||||||| || || | ||||| ||||| || Sbjct 23083536 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCTGGA 23083595 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || || || || |||||| || | || || ||||| Sbjct 23083596 GGGATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCC 23083655 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || || || || | ||| || ||||| Sbjct 23083656 ACCTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23083705 >seq7 Length=44630203 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTT-AGAGATATTATAATCAGA 192368 ||||| | |||||| | || | || | ||||| |||||| ||| || || || |||| Sbjct 36873447 CCACCACGAAGACGCAGCACAAGGTGAAGAGTAGACTCTTTCAGA-ATGTTTTAGTCAGC 36873389 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAA-TCTCTGTTGATCAGGTG 192427 | ||| | | |||| |||||||| || ||||||||||| || ||| | || || ||| Sbjct 36873388 AAGTGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCCTCCGCTGGTCTGGTA 36873329 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||| || || || || | ||| ||| |||||| || | ||||| ||| | Sbjct 36873328 GGATTCCCTCCTTGTCCTGGAATTTTGCTTTGACATTATCAATTGTGTCTGAACTTTCAA 36873269 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || | || | | |||||| | || || || | ||| ||||||||| Sbjct 36873268 CCTCCAAGGTGACAGATTTACCTATCAAAGTCTTCACAAAGATCTGCATT 36873219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984464977142850