Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq7 123 2e-23 seq13 111 1e-19 seq17 104 2e-17 seq10 86.0 5e-12 >seq7 Length=44630203 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| ||| | || || || ||||| ||| | || |||| || Sbjct 36855588 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 36855647 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| |||||| ||||||||||| | || || Sbjct 36855648 GAC---ACTATTGACAATGTCAAAGCCAAGATTCAGGACAAAGAAGGTATCCCACCAGAC 36855704 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || || |||| ||| || |||||||| || |||| | |||| |||| |||||| Sbjct 36855705 CAACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTAC 36855764 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| |||||||||||||| | ||| ||||| | | ||||| || || Sbjct 36855765 AACATCCAAAAAGAATCTACCCTCCACTTGGTGCTCCGTCTGCGCGGTGG 36855814 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 || ||||| || || |||| ||| || |||||||| || |||| | |||| |||| ||| Sbjct 36855930 GACCAACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGAT 36855989 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| |||||||||||||| | ||| ||||| | | ||||| || || Sbjct 36855990 TACAACATCCAAAAAGAATCTACCCTCCACTTGGTGCTCCGTCTGCGCGGTGG 36856042 >seq13 Length=45874162 Score = 111 bits (122), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| || | || || || ||||| ||| | || |||| || Sbjct 29045551 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 29045492 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| |||||| ||||||||||| | || || Sbjct 29045491 GAC---ACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGAC 29045435 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || || |||| ||| || |||||||| || |||| | |||| |||| |||||| Sbjct 29045434 CAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTAC 29045375 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||||||||| | ||| ||||| Sbjct 29045374 AACATCCAGAAAGAATCTACCCTCCACTTGGTG 29045342 Score = 111 bits (122), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| || | || || || ||||| ||| | || |||| || Sbjct 29059485 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 29059426 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| |||||| ||||||||||| | || || Sbjct 29059425 GAC---ACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGAC 29059369 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || || |||| ||| || |||||||| || |||| | |||| |||| |||||| Sbjct 29059368 CAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTAC 29059309 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||||||||| | ||| ||||| Sbjct 29059308 AACATCCAGAAAGAATCTACCCTCCACTTGGTG 29059276 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || |||||||| |||||||| ||||| ||| | || ||| | | Sbjct 23083933 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23083874 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | |||||| |||||| ||||| ||||| | || || || Sbjct 23083873 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 23083814 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | |||||||||||| || ||||||| | || | || ||||||||| Sbjct 23083813 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 23083754 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| ||||| || Sbjct 23083753 ATCCAAAAGGAATCAAC 23083737 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || |||||||| |||||||| ||||| ||| | || ||| | | Sbjct 23088401 ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23088342 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | |||||| |||||| ||||| ||||| | || || || Sbjct 23088341 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 23088282 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | |||||||||||| || ||||||| | || | || ||||||||| Sbjct 23088281 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 23088222 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| ||||| || Sbjct 23088221 ATCCAAAAGGAATCAAC 23088205 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||||| ||||| || ||||| ||| | || ||| | Sbjct 23088173 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 23088114 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| |||||||| ||| | ||| ||||| Sbjct 23088113 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 23088054 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| ||| |||||||| || ||||||| ||||| | || ||||||||| Sbjct 23088053 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 23087994 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||| || | ||| ||||| Sbjct 23087993 ATTCAGAAGGAATCCACCCTTCACTTGGTG 23087964 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| || | || || || ||||| ||| | || |||| || Sbjct 29045779 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 29045720 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| |||||| ||||||||||| | || || Sbjct 29045719 GAC---ACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGAC 29045663 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || || |||| ||| || |||||||| ||||||| | | || | || |||||| Sbjct 29045662 CAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGTACCCTTGCCGATTAC 29045603 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| ||||| || || | ||| ||||| Sbjct 29045602 AACATTCAGAAAGAGTCCACCCTCCACCTGGTG 29045570 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || || || || || |||||| | || |||| | Sbjct 29046007 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACAATTACCCTTGAGGTGGAGAGTTCT 29045948 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| |||||||| || | || || ||| Sbjct 29045947 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCCGACCAA 29045888 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || || ||||| ||||||| | | || | || ||||||||| Sbjct 29045887 CAGAGACTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTGCCGATTACAAC 29045828 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| ||||| || || | ||| ||||| Sbjct 29045827 ATTCAGAAAGAGTCCACCCTCCACCTGGTG 29045798 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || || || || || |||||| | || |||| | Sbjct 29059713 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACAATTACCCTTGAGGTGGAGAGTTCT 29059654 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| |||||||| || | || || ||| Sbjct 29059653 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAA 29059594 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| ||||||| | | || | || ||||||||| Sbjct 29059593 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTGCCGATTACAAC 29059534 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| ||||| || || | ||| ||||| Sbjct 29059533 ATTCAGAAAGAGTCCACCCTCCACCTGGTG 29059504 >seq17 Length=41641078 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||||| ||||| || ||||| ||| | || |||| | | Sbjct 3124244 ATGCAGATCTTCGTGAAAACTTTGACCGGTAAGACCATCACCCTTGAGGTGGAGTCCTCC 3124303 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| |||||| ||||| ||||| | || || || Sbjct 3124304 GACACCATCGATAACGTGAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 3124363 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||||||||||||||| ||||||| |||| | || || |||||| Sbjct 3124364 CAGAGACTTATCTTTGCGGGTAAACAGCTTGAGGATGGTCGAACCCTTGCCGACTACAAC 3124423 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| ||||| || | ||| | ||| Sbjct 3124424 ATCCAAAAGGAATCCACTCTCCACCTCGTG 3124453 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| || || || ||||| ||| | || |||| | Sbjct 3124700 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACCTTGGAGGTGGAGAGTTCA 3124759 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| || || || || | ||| || || Sbjct 3124760 GATACCATAGACAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 3124819 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||||||||| || |||| |||| | || ||||| ||| Sbjct 3124820 CAGAGGCTTATCTTTGCTGGTAAACAGCTTGAAGATGGACGAACCCTTGCAGATTATAAC 3124879 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || |||||||| ||||| |||| || || || || || || Sbjct 3124880 ATCCAGAAGGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGTGG 3124926 >seq10 Length=51566898 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| ||||||||||||| ||||| | || ||| | Sbjct 4577016 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATTACGCTAGAGGTAGAGTCCTCT 4576957 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| |||||| || || ||||| | || |||||| Sbjct 4576956 GACACAATCGATAACGTGAAAGCGAAGATCCAGGATAAGGAAGGTATTCCACCGGATCAG 4576897 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | || || || ||| |||| || | |||||| | || |||||||| Sbjct 4576896 CAACGTCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGAACCCTCGCCGATTACAAT 4576837 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| ||||| ||| | || ||||| Sbjct 4576836 ATTCAAAAGGAATCGACGCTTCATCTGGTG 4576807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412835607475163