Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 3e-14 seq20 93.3 1e-13 >seq3 Length=45779434 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTT 131919 || || || || ||||| || || || |||||||| || || ||||| || || || || Sbjct 40573103 CTCGTGGCATTCGCTTGCGTCGAGGGAATATTCTTCTCCGGAAGCTTT-TGCGCGATATT 40573161 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 |||||| ||||||||||| || ||||| || ||| | || ||||| || |||||||| | Sbjct 40573162 TTGGCTCAAGAAGCGTGGGTTAATGCCGGGGCTCACCTTCTCCAACGAACTCATCTCGCG 40573221 Query 131980 AGATGA 131985 |||||| Sbjct 40573222 AGATGA 40573227 >seq20 Length=47900577 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || || ||||| || |||| |||||||| || || ||||| || || |||||||| Sbjct 3442448 GCATTCGCTTGCGTCTAAGGAATATTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTC 3442389 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGA 131985 |||||||| || || ||| | || ||| | || |||||| ||||||||||| ||||||| Sbjct 3442388 AAGAAGCGCGGGTTAATGTCAGGGCTCACCTTCTCCAATGAATTCATCTCGCGAGATGA 3442330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186794689607551