Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq1190 558 1e-154 seq13 434 3e-117 seq14 369 1e-97 seq11 363 5e-96 seq2 149 2e-31 >seq1190 Length=152218 Score = 558 bits (618), Expect = 1e-154 Identities = 723/985 (73%), Gaps = 14/985 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | || |||||||| |||| |||||||| ||||||| Sbjct 1323 TAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1264 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 ||| | | | | || || |||| || ||||| || || ||||| || || |||| Sbjct 1263 TCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTTATTGCTGCCCCTCCAG 1205 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || || || || || || || |||||||||||||| |||| Sbjct 1204 TAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCA 1145 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | || || || || | ||||| || || ||||| Sbjct 1144 TTTCTGGTGCCATTATTCCTACTTCTGCG--GCTATAGGTTTGCACTTTTATCCTATTTG 1087 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| || ||||||||||| | |||||||| || || | |||| | || | Sbjct 1086 GGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCT 1027 Query 19807 CCACTTCCTCATTGGCAT--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGA 19864 |||||| | |||| | || |||| ||||||| || |||||||||||||| | ||| Sbjct 1026 ACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGGCGTGAGTGGGAACTTAGTTTTCGT 969 Query 19865 CTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCG 19924 | || ||| | ||||||||| |||||| || || ||||| ||||||||||| |||| Sbjct 968 TTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCT 909 Query 19925 GTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTAT 19983 || ||||| | |||| || |||||||||| ||||| || |||| ||||||| | || || Sbjct 908 GT-TTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAAT 850 Query 19984 CTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCC 20043 || ||||| ||||| | ||| | ||||| || || || ||||| ||||| ||||| || Sbjct 849 TTCAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCC 790 Query 20044 GTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGG 20103 || |||||| | ||||| |||||||||||||| || || ||||||||||| ||||| || Sbjct 789 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 730 Query 20104 TTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATG 20162 ||| |||| || | || | ||| | | || || || ||| | ||| | || | | Sbjct 729 TTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 671 Query 20163 GTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTG 20222 |||||| ||||| ||||| ||||| |||||||| || ||||| ||||||||||| |||| Sbjct 670 GTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTG 611 Query 20223 GACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTG 20282 | || |||||||||||||| || |||||||||| |||||| |||| |||||| | | Sbjct 610 GCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 551 Query 20283 CTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTA 20342 |||| ||||| || ||||| |||||||| | || || || | || ||||| || | Sbjct 550 CTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCA 491 Query 20343 ATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATA 20402 | | || |||||||| || ||||| ||| | | || | | |||||||| ||| ||| Sbjct 490 ACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 431 Query 20403 CTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATG 20462 | |||||||| ||| | || || ||||| || || | || || ||||||||||| |||| Sbjct 430 CCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATG 371 Query 20463 CTCATAACTTCCCACTTGACCTTGC 20487 ||||||| ||||| || || || || Sbjct 370 CTCATAATTTCCCTCTAGATCTAGC 346 >seq13 Length=45874162 Score = 434 bits (480), Expect = 3e-117 Identities = 634/886 (72%), Gaps = 34/886 (4%) Strand=Plus/Plus Query 19610 TTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTT 19669 || ||||| || || | ||| || |||||||| || || || || || || || || Sbjct 7358216 TTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTA 7358275 Query 19670 CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGAC 19727 |||||||||||||| ||||| || || ||| | |||| | | || || || || Sbjct 7358276 CTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG--GCTATAGGTT 7358333 Query 19728 TACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGAC 19787 | ||||| || || ||||||||||| || ||||||||||| | || ||||| || | Sbjct 7358334 TGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAACGGCGGTC 7358393 Query 19788 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CTATGCTTACATGGGACGAGA 19845 | | |||| | | | |||||| | |||| | || |||| ||||||| || || Sbjct 7358394 CTTATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGGCGTGA 7358451 Query 19846 GTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCC 19905 |||||||||||| | ||| | || ||| | ||||| ||| ||| Sbjct 7358452 GTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGAATT---------------GCT-- 7358494 Query 19906 GGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCG 19964 ||||||||||| |||| || ||||| | |||| || |||||||||| ||||| || | Sbjct 7358495 -GTTGCAGCCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAG 7358552 Query 19965 ATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAAC 20024 ||| ||||||| | || || || ||||| | ||| | ||| | ||||| || || | | Sbjct 7358553 ATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAGGCTAAGC 7358612 Query 20025 ATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCAC 20084 |||| ||||| ||||| || || |||||| | | ||| |||||||||||||| || || Sbjct 7358613 ATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGCGGCTCCT 7358672 Query 20085 TATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAA 20143 |||| ||||| ||||| | ||| |||| || | | | ||| | | || || || ||| Sbjct 7358673 TATTTAGTGCTATGCATGATTC-CTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAA 7358731 Query 20144 CAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTA 20203 | ||| | || | ||||||| ||||| ||||| || || |||||||| || ||| Sbjct 7358732 AATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAGGAAACCTATAATATTGTA 7358791 Query 20204 GCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGT 20263 | ||||||||||| ||||| || |||||||||||||| || |||||||||| ||| Sbjct 7358792 GTTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGT 7358851 Query 20264 TCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGC 20323 ||| |||| |||||| ||||||| ||||| | ||||| |||||||| | || || | Sbjct 7358852 TCTTTACATTTCTTCTTTGCTGCTTGGCCTATAGTAGGTATTTGGTTTACCGCTTTAG-- 7358909 Query 20324 GTTTCTACA--ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACA 20381 || || ||| ||||| || || | || |||||||| || ||||| ||| | | || | Sbjct 7358910 GTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATA 7358969 Query 20382 ACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTG 20441 | |||||||| ||| |||| |||||||| ||| | || || ||||| || || | | Sbjct 7358970 GTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGG 7359029 Query 20442 AGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 | || ||||||||||| ||||||||||| ||||| || || || || Sbjct 7359030 AAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 7359075 >seq14 Length=49042192 Score = 369 bits (408), Expect = 1e-97 Identities = 430/574 (75%), Gaps = 6/574 (1%) Strand=Plus/Plus Query 19730 CACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCG 19789 ||||| || || ||||||||||| || ||||||||||| | || ||||| | || Sbjct 41705907 CACTTTTATCCTATTTGGGAAGCGGCATCTATTGATGAATGGTTATATAACGGCGATCCT 41705966 Query 19790 TTCCAACTTGTGGTCTTCCACTTCCTCATTG--GCATCTATGCTTACATGGGACGAGAGT 19847 | |||| | || | |||||| | ||| | | || ||| |||||||| || |||| Sbjct 41705967 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGGCGTGAGT 41706024 Query 19848 GGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGG 19907 |||||||||| | ||| | || ||| | |||| |||| |||||| || || ||||| | Sbjct 41706025 GGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCTG 41706084 Query 19908 TTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATG 19967 |||||||||| |||| || || | |||| || |||||||||| ||||| || |||| Sbjct 41706085 TTGCAGCCGCTACTGCTGTTTTCTTTATCTATCCTATTGGTCAGGGAAGCTTTTCAGATG 41706144 Query 19968 CTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATA 20027 ||||||| | || || | ||||| ||||| | ||| | ||||| || || || |||| Sbjct 41706145 GTATGCCTCTAGGAATTTTAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATA 41706204 Query 20028 ACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTAT 20087 | ||||| ||||| || || |||||| | ||||| |||||||||||||| || || |||| Sbjct 41706205 ATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 41706264 Query 20088 TCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAG 20146 |||||| ||||| ||||| |||| || | || | ||| | | || || || ||| | Sbjct 41706265 TCAGTGATATGCATGGTTC-CTTGGTAACTTCTTGTTTGATCAGGGAAACCACAGAAAAT 41706323 Query 20147 GAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCC 20206 ||| | || | ||||||| ||||| ||||| ||||| |||||||| || ||||| Sbjct 41706324 GAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCT 41706383 Query 20207 GCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCT 20266 ||||||||||| ||||| || |||||||||||||| || |||||||||| | |||||| Sbjct 41706384 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTGTCGTTCT 41706443 Query 20267 CTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAG 20300 |||| |||||| | ||||| ||||| || |||| Sbjct 41706444 TTACATTTCTTCTTAGCTGCTTGGCCAGTAGTAG 41706477 >seq11 Length=34766867 Score = 363 bits (402), Expect = 5e-96 Identities = 431/575 (75%), Gaps = 8/575 (1%) Strand=Plus/Minus Query 19730 CACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCG 19789 ||||| || || ||||||||||| || ||||||||||| | || | ||| || || Sbjct 15042876 CACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAGCGGTGGTCCT 15042817 Query 19790 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CTATGCTTACATGGGACGAGAGT 19847 | |||| | || | |||||| | |||| | || |||| ||||||| | |||| Sbjct 15042816 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGGTGTGAGT 15042759 Query 19848 GGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGG 19907 |||||||||| | ||| | || ||| | |||| |||| |||||| || || ||||| | Sbjct 15042758 GGGAACTTAGTTTTCGTTTGGGCATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCTG 15042699 Query 19908 TTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGAT 19966 |||||||||| |||| || ||||| | |||| || |||||||||| ||||| || ||| Sbjct 15042698 TTGCAGCCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGAT 15042640 Query 19967 GCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACAT 20026 | ||||||| | | || | ||||| ||||| | ||| | ||||| || || || ||| Sbjct 15042639 GGTATGCCTCTAAGAATTTTAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCAT 15042580 Query 20027 AACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTA 20086 || ||||| ||||| || || |||||| | ||||| |||||||||||||| || || ||| Sbjct 15042579 AATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 15042520 Query 20087 TTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACA 20145 |||||||| ||||| ||||| |||| || | || | ||| | | || || || ||| | Sbjct 15042519 TTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTTGTTTGATCAGGGAAACCACAGAAAA 15042461 Query 20146 GGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGC 20205 ||| | || | ||||||| ||||| ||||| ||||| |||||||| || ||||| Sbjct 15042460 TGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGC 15042401 Query 20206 CGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTC 20265 ||||||||||| ||||| || |||||||||||||| || |||||||||| | ||||| Sbjct 15042400 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTGTCGTTC 15042341 Query 20266 TCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAG 20300 | |||| |||||| | ||||| |||| || |||| Sbjct 15042340 TTTACATTTCTTCTTAGCTGCTTGGCTTGTAGTAG 15042306 >seq2 Length=48577505 Score = 149 bits (164), Expect = 2e-31 Identities = 198/270 (73%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 19914 CCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATG 19972 |||| |||| || ||||| | |||| || |||||||||| ||||| || |||| |||| Sbjct 24951526 CCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATG 24951468 Query 19973 CCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATT 20032 ||| | || || || | ||| ||||| | ||| | ||||| || || | ||||| ||| Sbjct 24951467 CCTCTAGGAATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATT 24951408 Query 20033 CTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGT 20092 || ||||| || || |||||| | ||||| |||||||||||||| || || ||||||||| Sbjct 24951407 CTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGT 24951348 Query 20093 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAG 20151 || ||| | ||||| |||| || | | | ||| | | || || || ||| | ||| Sbjct 24951347 GCTATGTATGGTTC-CTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATC 24951289 Query 20152 TCAGAACTATGGTTACAAGTTTGGGCAAGA 20181 | || | ||||||| ||||| ||||| Sbjct 24951288 TGCTAATGAAGGTTACAGATTTGGTCAAGA 24951259 Score = 80.6 bits (88), Expect = 8e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 ||||| ||||| ||||| ||||| |||||||| || ||||| ||||||||||| ||||| Sbjct 20536112 TTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGG 20536171 Query 20224 ACGTTTGATCTT 20235 || |||||||| Sbjct 20536172 CCGATTGATCTT 20536183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148826695095678