Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-19 seq8 109 8e-19 seq3 109 8e-19 seq4 93.3 6e-14 seq16 86.0 9e-12 >seq5 Length=42234498 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | ||| |||||||| |||||||||||| | | ||| | || | | Sbjct 37338157 GTTCCTGCATTGAAAAGTGTTGGAGATGCATGAGTGAACCATCTCTGAGACATCATGTGG 37338216 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||| | ||| || || || || || ||||||||| | || || | ||||||| Sbjct 37338217 TATGTTCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATCAAC 37338276 Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || |||||||| | ||| || | ||| | | | ||||| |||||||| | || | Sbjct 37338277 ATGTGCTGAGGCCTTTCCACAACCTTTCCT--TGAACCTTCAAGAGGTATGACCTCTCAA 37338334 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||||| || ||||| || | || |||||| || || || || || Sbjct 37338335 GAGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATAGATTAT 37338383 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | || | || | |||||| |||| |||||| Sbjct 37337783 TCCCCCTTGATCAACATAGCGAGCAGTATCGTTGAACACACGCAGCATTGGAACAATACC 37337842 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| || ||||||||| | || ||||| || || | Sbjct 37337843 ATTTGATGTCCCATTTGTGCCACGGATGTAACTTCCTGTGGCACGAATGTTGTGAACACT 37337902 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | ||||| ||||| ||||||||||| Sbjct 37337903 AACACCAATTCCTCCAGCTGATTTGCTAATGACTGCACACTCCTTCAAAGTGTCATATAT 37337962 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||||| ||||||||| ||||| | ||| || || ||| Sbjct 37337963 TCCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 37338005 >seq8 Length=47837022 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 11047602 TCCCCCCTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACC 11047661 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||| ||| || |||| ||||| ||| | || |||| || |||| Sbjct 11047662 ATTTGATGTCCCAGGTGTGGCACAAATGTAACTGCCTGTGGCATGAATGTTGTGAATACT 11047721 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||||||||| ||| || | | |||| ||||| ||||||||||| Sbjct 11047722 AACACCAATTCCTCCTGCTGATTTGCTAATGACAACACACTCCTTCAAAGTGTCATATAT 11047781 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||||| |||| |||| ||||| | ||| || || ||| Sbjct 11047782 TCCCTCTATACTATAATCTTTCATGCACACAAGGAAGCAACTA 11047824 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||||||| |||| |||||| |||||||| || | | | |||||||| || || Sbjct 11045562 TAAAACTCTACGACTGTAGATATTAGAAGTATATGGCTCAAAACACTCATTATTGCCAAG 11045621 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| || ||||||||||||||||||||| || || Sbjct 11045622 AATCTGGCTAGTTGATGCAGTTGGCATAGGGGCAAC 11045657 >seq3 Length=45779434 Score = 109 bits (120), Expect = 8e-19 Identities = 232/341 (68%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || |||||||| || || || |||||||||| || | |||||| || || ||||| Sbjct 40573251 CACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGC 40573192 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAA 39735 || ||||||| |||||||| |||||||||||||| || ||||||| ||| || ||||| Sbjct 40573191 CCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCGC-GCAAAAGCTTCCGGAGAAGAA 40573133 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA-TTATGTA 39794 || || || || || ||||| || || | ||| || || | | | || | Sbjct 40573132 TATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCG-AAGGATTCTGAGGCATCGA 40573074 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| | ||||| | ||||| || | | || || || || | ||| || || Sbjct 40573073 TCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAA 40573014 Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 | ||| || |||||| ||||| | || || |||| | || || ||||||| Sbjct 40573013 ACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTT 40572954 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955 | || ||||| ||||| || || || || || ||||| ||| Sbjct 40572953 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 40572913 >seq4 Length=52388848 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||||||| |||| ||||| ||||||||||| | | | ||||||||||| || Sbjct 48827059 TAAAACTCTACGACTGTAGATATTTGAAGTATATGGTTCAAAACACTCATTATTTCCAAG 48827000 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| || ||| ||||||||||||||||| ||||| Sbjct 48826999 AATCTGGCTAGTGGATGCAGTTGGCATAGGGGCCAC 48826964 >seq16 Length=37887014 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||| |||||||| || || ||||| | |||| ||| || || || |||||| Sbjct 5526490 CAAGCGAAATCACAATGAAGACCTTCATCGCGTGATATTAGTTCATTTGAGAAAGTGAGT 5526549 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAA 39735 || ||||| || ||||| ||||||||||| || | || ||| ||| ||| || ||||| Sbjct 5526550 CCGGGCATGAGTCCACGTTTTTTGAGCCAGAAGACAGC-GCAGAAGCTTCCGGAGAAGAA 5526608 Query 39736 GATGCCTTC 39744 ||| ||||| Sbjct 5526609 GATACCTTC 5526617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686898573645240