Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 105 5e-18 seq20 98.7 8e-16 seq7 82.4 6e-11 >seq3 Length=45779434 Score = 105 bits (116), Expect = 5e-18 Identities = 250/370 (68%), Gaps = 6/370 (2%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||| | ||| | || || || || ||| || || || ||||| ||||| ||||||| Sbjct 40572885 AAGAAATCCAACTCCCGGAGGCCCGCGCTTTCTACGGCTTCCAAATCGCCATCGAAAATA 40572944 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA-TGGGCACGAGAAG 44032 | || || ||||||||||| || || |||| || ||||||||||| | || || || Sbjct 40572945 TCCACTCCGAAATGTACAGCCTCCTCTTAGAAACCTACATCAAAGACTCCACA-GAAAAA 40573003 Query 44033 CATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGC 44091 |||| ||||| || ||| | || | || ||| || | | ||||| | ||||| Sbjct 40573004 AATCGTCTGTTTCGCGCCATAAACACCATCCCATGC-ATCACCAAAAAAGCCCAGTGGGC 40573062 Query 44092 CCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 ||| ||||| || | || || || | || || || || || || || || Sbjct 40573063 CCTCCGCTGGATCGATGCCTCAGAATCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGCGT 40573122 Query 44152 GGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 || || || ||||| || || | | ||||| || ||||||||| | ||||| || || | Sbjct 40573123 CGAGGGAATATTCTTCTCCGGAAGCTTTTGC-GCGATATTTTGGCTCAAGAAGCGTGGGT 40573181 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 | ||||| ||| | || || || || || | || || ||||| || | || |||| Sbjct 40573182 TAATGCCGGGGCTCACCTTCTCCAACGAACTCATCTCGCGAGATGAGGGGCTTCACTGCG 40573241 Query 44271 ATTTTGCTTG 44280 | || || || Sbjct 40573242 ACTTCGCGTG 40573251 >seq20 Length=47900577 Score = 98.7 bits (108), Expect = 8e-16 Identities = 259/385 (67%), Gaps = 13/385 (3%) Strand=Plus/Minus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||| | ||| | | || || || ||| || || || ||||| ||||| ||||||| Sbjct 3442671 AAGAAATCCAACTCCTGGAGGCCCGCGCTTTCTACGGCTTCCAAATCGCCATCGAAAATA 3442612 Query 43974 TTCATTCGGAAATGTACAG--TCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA 44031 | || || ||||||||||| |||||| |||| || |||| |||||| ||| | || Sbjct 3442611 TCCACTCCGAAATGTACAGCCTCTTCT--TAGAAACCTACACCAAAGA-CTCCACAAAAA 3442555 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGG 44090 || | |||||| ||| ||| | || | || ||| || | | ||||| | |||| Sbjct 3442554 AAATTGTTTGTTTCGTGCCATAAACACCATCCCATGC-ATCACCAAAAAAGCCCAGTGGG 3442496 Query 44091 CCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 |||| | | ||| || | || || || | ||| || || | || || || | Sbjct 3442495 CCCTCCAGTAGATCAACGCCTCAGAATCCTTCGCAGAGCGCCTCATGGCATTCGCTTGCG 3442436 Query 44151 TGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 | |||| || ||||| || || | | | ||| || ||||||||| | ||||| || || Sbjct 3442435 TCTAAGGAATATTCTTCTCCGGAAGCTTCTGC-GCGATATTTTGGCTCAAGAAGCGCGGG 3442377 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 || ||| | ||| | || || || ||||| || || || ||||| || | || | | Sbjct 3442376 TTAATGTCAGGGCTCACCTTCTCCAATGAATTCATCTCGCGAGATGAGGGGCTTCACTAC 3442317 Query 44270 GATTTTGCTTG---CTTGTTACTTG 44291 || || || || |||| |||||| Sbjct 3442316 GACTTCGCGTGTCTCTTG-TACTTG 3442293 >seq7 Length=44630203 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||| ||| | || || |||| |||||||| || ||||| || ||||||||| || Sbjct 43230631 GCCATATTCTGGCTTAAAAAGAGAGGATTGATGCCAGGTTTGACATTCTCAAATGAGCTA 43230690 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 || | | ||||| ||| | ||||| ||||||||||| Sbjct 43230691 ATCTCTAGAGATGAGGGCCTTCATTGTGATTTTGCTTG 43230728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450230801955