Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 136 5e-27 seq15 114 2e-20 seq9 114 2e-20 seq5 93.3 5e-14 seq10 86.0 8e-12 seq6 84.2 3e-11 >seq3 Length=45779434 Score = 136 bits (150), Expect = 5e-27 Identities = 385/579 (66%), Gaps = 17/579 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCAT 129786 || |||||||| |||||||| |||||||| || ||||| | |||| | || |||||| Sbjct 40573536 TACTCCCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTG-AAGCGAAATAAGCTCCAT 40573478 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGC-ACTCC-AATCTGTTTGAGGAGA 129844 ||||||| || |||| ||| || | || | || || || | | || | Sbjct 40573477 CCAATCAAAGGGATTCT--GAGCACCGTACACCTTCCCACACCCAAGCGCATCCAGCAAC 40573420 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 ||||||| || ||||||| ||| | |||| ||| |||||| || | | | Sbjct 40573419 CGATCCGCAACAAACTCAATATACCGACTCATCAACTCCCCGTTCATCCCCACCAACGCA 40573360 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || || |||||||| | | ||| || ||||||| ||||| || || ||||| || | Sbjct 40573359 CACGGAAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCGTCACGCACAATCTCC 40573300 Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTG---AAGAGTTCCACGGCAAAC 130021 | | |||| | | | | || | | | | | ||||| |||| | || Sbjct 40573299 CTCACGCGCTCCTCACTAAGCTTCTTCCTGAGAAGCGAGTACAAGAGA--CACG-CGAAG 40573243 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| || ||||| || || ||||||||||| || |||||| || || ||||| Sbjct 40573242 TCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGCCCCGGCATT 40573183 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 | || |||||||| | ||| || ||||| ||||| || |||||||| || ||||| Sbjct 40573182 AACCCACGCTTCTTGAGCCAAAATATCGCGCAAAAGCTTCCGGAGAAGAATATTCCCTCG 40573123 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 130201 || || ||||| || | ||| ||||| || ||||| || | ||| | ||| Sbjct 40573122 ACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGA---GGCATCGATCCAGCGG 40573066 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 130261 | |||||||| || ||||| ||| || |||| ||| | || || ||| || Sbjct 40573065 AGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAAACAGACGA 40573006 Query 130262 TTCTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAG 130299 || ||||||| |||| ||||||||||| | |||| ||| Sbjct 40573005 TTTTTTTCTG-TGGAGTCTTTGATGTAGGTTTCTAAGAG 40572968 >seq15 Length=51756343 Score = 114 bits (126), Expect = 2e-20 Identities = 181/256 (71%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 ||||| || |||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 13381209 TCAAGAATGTCAACCCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 13381150 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | | Sbjct 13381149 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 13381093 Query 14216 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 ||| || | || | |||| | || || || ||||||||||| | ||||| || ||| Sbjct 13381092 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 13381033 Query 14273 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 13381032 GGGGCATTCTCTTTGGC--CTTCCTGAATAAATCGCGGACTCGAGAAGCACCAACACCAA 13380975 Query 14331 CAAACATCTCCACAAA 14346 |||||||||| ||||| Sbjct 13380974 CAAACATCTCTACAAA 13380959 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 180848 CGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 180907 ||||| |||||||| || ||||||| || | ||||||||| || || |||||||| | Sbjct 51501862 CGATGACAAACTCCGTGGAGAAGATGTTAGTGAGCTTGGCACCATAACCGTTGCGTCCGC 51501921 Query 180908 CAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAAGGTAA 180967 | | | |||||| |||||||| |||||| | || ||||||||||| || ||| | | Sbjct 51501922 CGGTAGTCTTCTTCTCGTTGTCATTGTAGTTGCTGCTGGTGAGGAGGTGGCCGAAGATGA 51501981 Query 180968 GTTCTGG 180974 |||| || Sbjct 51501982 GTTCGGG 51501988 >seq9 Length=50189283 Score = 114 bits (126), Expect = 2e-20 Identities = 181/256 (71%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 ||||| || |||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 4611952 TCAAGAATGTCAACTCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 4611893 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | | Sbjct 4611892 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 4611836 Query 14216 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 ||| || | || | |||| | || || || ||||||||||| | ||||| || ||| Sbjct 4611835 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 4611776 Query 14273 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 4611775 GGAGCATTCTCTTTGGC--CTTCCTGAATAAATCACGGACTCGAGAAGCACCAACACCAA 4611718 Query 14331 CAAACATCTCCACAAA 14346 |||||||||| ||||| Sbjct 4611717 CAAACATCTCTACAAA 4611702 >seq5 Length=42234498 Score = 93.3 bits (102), Expect = 5e-14 Identities = 249/372 (67%), Gaps = 18/372 (5%) Strand=Plus/Plus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| ||||| || | | | ||| |||||| || ||| | ||| || || || Sbjct 32503025 ATCAAACCGACCCGGTCTCAATAAGGCAGAGTCAAGAATGTCAGCCCTGTTAGTTGCTGC 32503084 Query 14125 GATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 | ||||| ||| || || |||| ||||| |||||||| || ||||| ||||| || Sbjct 32503085 AACGACAATGATACCAGT---GTTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTT 32503141 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGCAGGC---ATACCACCCGCACTGCGTTGCTTACC 14238 || ||| || || | |||||||||| || || ||| | | || || ||| || Sbjct 32503142 GAGGGTCTGCTCTCTTTCATCATTCCCACCACCAATTCCAGTCCCTCTTTGT--CTT-CC 32503198 Query 14239 GACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA-- 14296 || || ||||||||||| | || || || || || ||| || ||| |||| Sbjct 32503199 AACAGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTG 32503256 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || | ||| || || | ||||| ||||| ||||||||||| ||||| | | | Sbjct 32503257 AACAAATCACGAACACGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCT 32503316 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 | | |||| || || || || || |||||| || || || ||| | || ||||| Sbjct 32503317 G-ATATTGAGAAAAATGGAACACCAGCTTCACCAGCAATAGCCTTGGCTAACAGTGTCTT 32503375 Query 14416 CCCCGTCCCTGG 14427 ||| || ||||| Sbjct 32503376 CCCAGTTCCTGG 32503387 >seq10 Length=51566898 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 180848 CGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 180907 ||||| ||||| | || ||||||| || | |||||| || ||||| |||||||| | Sbjct 11995441 CGATGACGAACTCAGTCGAGAAGATGTTGGTGAGCTTGGCGCCATAGCCGTTGCGTCCCC 11995500 Query 180908 CAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAAGGTAA 180967 | | | |||||| |||||| | |||||| | || ||||||||||| |||||| | | Sbjct 11995501 CGGTAGTCTTCTTCTCGTTGTCGTTGTAGTTACTGCTGGTGAGGAGGTGGCCAAAGATGA 11995560 Query 180968 GTTCTGG 180974 |||| || Sbjct 11995561 GTTCGGG 11995567 >seq6 Length=51416163 Score = 84.2 bits (92), Expect = 3e-11 Identities = 187/278 (67%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-G 14210 ||| |||||||||||||| | || ||||| || |||||||| | |||||||| || Sbjct 1474750 AAACCCATCCATCTCAGTAAGAAGCTGATTAATAGTTTGTTCCCTCTCATCATTTCCACC 1474809 Query 14211 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | || | ||||| | | ||| | || ||||||||||| ||||| |||||||| || | Sbjct 1474810 TCCTAGC-CCCGCCCCTCTCTGCCTCCCAACGGCGTCAATCTCATCAATGAAAACAATGC 1474868 Query 14271 ATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 | || || | || ||||| | ||| | ||| ||| ||||| || |||| Sbjct 1474869 ACGGCGCCTTCCCCTTCGCCTTCTCAAACAAATCCCTCACCCTCGAAGCACCAACCCCCA 1474928 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 | || | |||||| || | | || | || || || || || || ||| |||| Sbjct 1474929 CGAAAAGCTCCACGAACTCCGAAGCCGCGCACGAGAAAAACGGCACCCCAGCTTCTCCCG 1474988 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | | || | || || |||||||| || || || ||| Sbjct 1474989 CCACCGCCCTCGCCAGAAGGGTCTTTCCGGTTCCCGGT 1475026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425993045960