Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 seq19 111 2e-19 seq20 93.3 5e-14 seq16 91.5 2e-13 >seq3 Length=45779434 Score = 134 bits (148), Expect = 2e-26 Identities = 352/529 (67%), Gaps = 6/529 (1%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 ||||||||||||| | || |||||| | | |||||| | |||||| | |||| Sbjct 40572711 TGTATAAGAAAGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTGGACCTCTCGCAGGACC 40572770 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | |||| || |||| ||| ||||| || ||||||| ||||| |||| Sbjct 40572771 TCCGCCACTGGGCCACCCTCAGCGACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCT 40572830 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || || || || | ||||| | | | ||| |||| || Sbjct 40572831 TCTTCGCCGCCTCCGACGGCATCGTCCTAGAAAACCTCGCCGGCCGCTTCACCAAAGAAA 40572890 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831 |||| | | |||||||| | ||||||| | || ||| || ||| ||||||| Sbjct 40572891 TCCAACTCCCGGAGGCCCGCGCTTTCTACGGCTTCCAAATCGC-CATCGAAAATATCCAC 40572949 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 ||||| | |||| ||| | | || | | |||| || | ||| || | || Sbjct 40572950 TCCGAAATGTACAGCCTCCTCTTAGAAACCTACATCAAAGACTCCACAGAAAAAAATCGT 40573009 Query 59892 CTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 ||||| || |||||| | || |||| ||| | | ||||||| | |||||| | | Sbjct 40573010 CTGTTTCGCGCCATAAACACCATCCCATGCA-TCACCAAAAAAGCCCAGTGGGCCCTCCG 40573068 Query 59951 GTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAG 60009 ||||| || ||| || ||| || || | || ||| | || || || ||||| || | Sbjct 40573069 CTGGATCGATGCCTC-AGAATCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGCGTCGAGG 40573127 Query 60010 GAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGC 60069 |||| |||||||| || || || || || || |||||||| |||||||| | |||| Sbjct 40573128 GAATATTCTTCTCCGGAAGCTTTTGCGCGATATTTTGGCTCAAGAAGCGTGGGTTAATGC 40573187 Query 60070 CGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || | ||||||||||| || || || || || ||||| || || Sbjct 40573188 CGGGGCTCACCTTCTCCAACGAACTCATCTCGCGAGATGAGGGGCTTCA 40573236 >seq19 Length=50746504 Score = 111 bits (122), Expect = 2e-19 Identities = 285/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 |||| || ||||||||||| ||||| ||||| |||||||||||||| || || |||| Sbjct 32416507 AAGGTATTTTCTTCTCTGGAAGCTTCTGCGCTATCTTCTGGCTCAAAAAACGAGGACTCA 32416566 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126 ||||||| || | |||||| ||||| || ||||| || ||||| || || || || | Sbjct 32416567 TGCCGGGGCTCACTTTCTCAAACGAACTCATTTCTCGCGACGAAGGGCTACACTGCGATT 32416626 Query 60127 TTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA---TATTCAC 60182 | || ||| | |||||| || | || | | || || | || |||| | Sbjct 32416627 TCGC-GTGTCTGCTCTACTCTCTGCTGAGGCAGAA--GCTC-ACCGAGGAGCGCGTGAGG 32416682 Query 60183 AAGATTGTTCAGTG--GGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCAT 60240 |||||| | || | | | || || | ||| | ||||| | || ||||| || | Sbjct 32416683 GAGATTG-TGAGGGACGCCGTG-GATATTGAGCGGGAGTTTGTGTGCGACGCGCTGCCCT 32416740 Query 60241 GCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACC 60300 || | | || ||| ||| || |||| || |||||| ||||||| || || | Sbjct 32416741 GCGCGTTGGTGGGGATGAACGGTGATTTGATGAGTCAATACATTGAGTTTGTGGCAGATC 32416800 Query 60301 GCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGA 60360 | | ||| | |||| || | ||| || | ||||| ||||| |||| Sbjct 32416801 GGTTGCTGGGGGCGCTTGGGTGCGGGAAGGTGTACAATGTTCAGAACCCGTTCGATTGGA 32416860 Query 60361 TGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTATT 60420 ||||| || ||| || | || |||||||||||||| |||||||| |||||||| ||| Sbjct 32416861 TGGAGCTGATTTCGCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAGTATC 32416920 Query 60421 CAAAG 60425 |||| Sbjct 32416921 AAAAG 32416925 Score = 98.7 bits (108), Expect = 1e-15 Identities = 294/446 (66%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||| | | |||| |||| |||||||| | || |||||| | | |||||| Sbjct 32415482 TACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCCTCGTTCTGGACGGCGGAGGAG 32415541 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 | |||||| || ||||| | |||||| |||| ||| ||||| || ||| Sbjct 32415542 GTGGACCTCTCCCAGGACCTCCGCCACTGGGACTCCCTCACCGACGGCGAGCGCCACTTC 32415601 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 ||| ||||| ||||||||||| || ||||| || || | || || | | | Sbjct 32415602 GTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCCTCGAGAACCTCGCC 32415661 Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TC 59812 | ||| | ||||| ||||| | ||||||||||| | ||||||| | ||| || Sbjct 32415662 GGGCGCTTCACAAAGGAGATCCAGCTCCCCGAGGCCCGGGCCTTCTACGGCTTCCAGATC 32415721 Query 59813 GTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGA 59872 | || |||| ||||||||||||| |||| ||| | |||| | | ||||||| Sbjct 32415722 G-CCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAAACCTACATCAAGGA 32415780 Query 59873 TCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTTAAACAAA 59931 | || ||||| || ||||||||||| || | | ||||| || || | | Sbjct 32415781 CTCCGACCAGAAGAACCACCTCTTCCGTGCCATCGACACCATCCCCTGC-GTCGCTAAGA 32415839 Query 59932 AAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATA 59990 |||| | |||||| | | ||||| || |||| | || || || | |||||| | Sbjct 32415840 AAGCCCAGTGGGCCCTTCGCTGGATCGATTCCT-CCGACTCCTTCGCCGAGCGTCTCGTT 32415898 Query 59991 GCTTTTGCATGCGTGGAAGGAATCTT 60016 || || ||||| || ||||| || || Sbjct 32415899 GCCTTCGCATGTGTTGAAGGTATTTT 32415924 >seq20 Length=47900577 Score = 93.3 bits (102), Expect = 5e-14 Identities = 228/338 (67%), Gaps = 7/338 (2%) Strand=Plus/Minus Query 59784 GAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTA 59842 |||||||| | ||||||| | || ||| || ||| |||||||||||| | ||| Sbjct 3442654 GAGGCCCGCGCTTTCTACGGCTTCCAAATCGC-CATCGAAAATATCCACTCCGAAATGTA 3442596 Query 59843 CTCGCTCATGATCGATAAGTTGGTCAAGGA-TCCGGAAGAGAAGGCTGGTCTGTTCCGTG 59901 | ||| | | || | | ||| || ||| || | || | || |||| |||| Sbjct 3442595 CAGCCTCTTCTTAGAAACCTACACCAAAGACTCCACAAAAAAA--ATTGTTTGTTTCGTG 3442538 Query 59902 CCATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGT 59960 ||||| | | | |||| ||| | | ||||||| | |||||| | |||| ||| | Sbjct 3442537 CCATAAACACCATCCCATGCA-TCACCAAAAAAGCCCAGTGGGCCCTCCAGTAGATCAAC 3442479 Query 59961 CCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTC 60020 | || ||| || ||| | || ||||| || || || ||||| ||||||| |||||| Sbjct 3442478 GCCTCAGAATCCTTCGCAGAGCGCCTCATGGCATTCGCTTGCGTCTAAGGAATATTCTTC 3442419 Query 60021 TCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGT 60080 || || ||||| || || || |||||||| ||||| || | ||| | || || | Sbjct 3442418 TCCGGAAGCTTCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGTCAGGGCTCACC 3442359 Query 60081 TTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||| || | || || || || ||||| || || Sbjct 3442358 TTCTCCAATGAATTCATCTCGCGAGATGAGGGGCTTCA 3442321 >seq16 Length=37887014 Score = 91.5 bits (100), Expect = 2e-13 Identities = 277/422 (66%), Gaps = 16/422 (4%) Strand=Plus/Minus Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 ||||| ||||||||||| || ||||| ||| | |||||||||||||| ||||| ||| Sbjct 5526617 GAAGGTATCTTCTTCTCCGGAAGCTTCTGCGCTGTCTTCTGGCTCAAAAAACGTGGACTC 5526558 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||| || || | |||||| || || || || || || || || || || ||| || Sbjct 5526557 ATGCCCGGACTCACTTTCTCAAATGAACTAATATCACGCGATGAAGGTCTTCATTGTGAT 5526498 Query 60126 TTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA---TATTCAC 60182 || || || | | ||| | | | | || | | || | || |||| | Sbjct 5526497 TTCGC-TTGTC-TTTTATACTCTCTGCTGAGACAGAAGCTC-ACCGAGGAGCGCGTAAGG 5526441 Query 60183 AAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGC 60242 ||||||| || || || | || | ||||| | || |||||||| ||| Sbjct 5526440 GAGATTGTGAAGGACGCGGTGGACATTGAACGGGAGTTTGTGTGCGACGCGCTTCCCTGC 5526381 Query 60243 AAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC 60302 | | || ||| ||| || |||| ||||||||| | ||||| ||||| || Sbjct 5526380 GCGTTGGTGGGGATGAACGGTGATTTGATGAGCCAGTACATTGAATTTGTTGCGGATCGG 5526321 Query 60303 CTCATGG----CCCAGTTTG-GAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACT 60357 | ||| | || || | ||||| | ||| || | || || ||||| | Sbjct 5526320 TTGCTGGGTGCGCTAGGGTGCGGGAAGG-----TGTACAATGTTCAGAATCCGTTCGATT 5526266 Query 60358 GGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATT 60417 |||||||| ||| || || | ||||||||||||||||| |||||||| |||||||| | Sbjct 5526265 GGATGGAGCTCATTTCTCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAAT 5526206 Query 60418 AT 60419 || Sbjct 5526205 AT 5526204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548516633837040