Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq1190 497 1e-135 seq13 389 5e-103 seq11 280 2e-70 seq14 277 2e-69 seq2 134 2e-26 seq18 129 7e-25 >seq1190 Length=152218 Score = 497 bits (550), Expect = 1e-135 Identities = 686/956 (72%), Gaps = 8/956 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | |||||||| | | | || || | | ||| Sbjct 1294 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTA 1236 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || |||||||| || || || || ||||| || |||||||| || || || Sbjct 1235 TTTATTATCGCTTTTATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 1176 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| ||||| || || || | | || | || Sbjct 1175 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 1116 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| || || || |||||||| ||| | ||||| |||||| | ||| Sbjct 1115 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATAC 1056 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---AC 176442 || || || || || |||| |||| | |||||| | | ||| | ||||| || Sbjct 1055 AACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTAC 999 Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502 ||||| || | ||||||||||||| | | || |||||||||||||| ||||||| Sbjct 998 ATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCA 939 Query 176503 TACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGA 176562 || || || || || | || || | || |||||| | ||||||| | ||||| ||| Sbjct 938 TATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGA 879 Query 176563 TCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTC 176622 || || |||||||||||||| || ||||||||||| ||||| |||||| ||||||| Sbjct 878 AGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTTCAATTTTATGATTGTATTT 819 Query 176623 CAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTT 176682 || || ||||| || ||||| ||||| ||||| || ||| | || ||||| ||||| || Sbjct 818 CAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTC 759 Query 176683 GGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAG 176742 || || || || ||| || ||||| || | || |||||| | | || || Sbjct 758 GGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAA 699 Query 176743 ACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATAC 176802 || || ||||| ||||| || | ||||||| ||| || ||||| ||||| || || Sbjct 698 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTAT 639 Query 176803 AACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAAT 176862 || ||||||||||| || ||||| ||||| || | |||||||| ||||| |||||| Sbjct 638 AATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAAC 579 Query 176863 AACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACT 176922 || || | | | || |||||| | || || | || || || | || |||||||| Sbjct 578 AATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACC 519 Query 176923 GCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTC 176982 || | ||| | |||| ||||| |||||| | || |||||||| |||||||| || || Sbjct 518 GCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTA 459 Query 176983 TTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTT 177042 | || | ||| || ||| ||| |||| ||||| ||||||| || |||||| Sbjct 458 GTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTT 399 Query 177043 GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGC 177098 ||||||||||| ||||| || ||||||||||| || ||||| || || || ||||| Sbjct 398 GGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCTGC 343 >seq13 Length=45874162 Score = 389 bits (430), Expect = 5e-103 Identities = 624/897 (70%), Gaps = 26/897 (3%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 |||||| | | |||||||| || || | || ||||| || |||||||| || || || Sbjct 7358204 TTTATCATCACTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTT 7358263 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| ||||| || || || | | || | || Sbjct 7358264 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 7358323 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| || || || |||||||| ||| | ||||| |||||| | || Sbjct 7358324 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATAT 7358383 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---AC 176442 || || || || || |||| || | | |||||| | | ||| | ||||| || Sbjct 7358384 AACGGCGGTCCTTATGAACTAATTATTCTACACTTCTTACTTGGTGT---AGCTTGCTAC 7358440 Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502 ||||| || | ||||||||||||| | | || ||||||||||| || ||||||| Sbjct 7358441 ATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGAATTGCTGTTGCA 7358500 Query 176503 TACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGA 176562 || || | || |||||| | ||||||| | ||||| ||| Sbjct 7358501 ------------------GCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGA 7358542 Query 176563 TCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTC 176622 || || |||||||||||||| || ||||||||||| | ||| |||||| ||||||| Sbjct 7358543 AGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTT 7358602 Query 176623 CAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTT 176682 || || |||| || ||||| ||||| ||||| || ||| | | ||||| ||||| || Sbjct 7358603 CAGGCTAAGCATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTC 7358662 Query 176683 GGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTT-AGAGA 176741 || || || | || || ||||| | | |||| || | || ||| | || || Sbjct 7358663 GGCGGCTCCTTATTTAGTGCTATGCATG-ATTCCTTGGTAACTTTTAGTTTGATCAGGGA 7358721 Query 176742 GACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATA 176801 || || ||||| ||||| || | ||||||| ||| || ||||| || || || || Sbjct 7358722 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAGGAAACCTA 7358781 Query 176802 CAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAA 176861 || ||||||| ||| || ||||| ||||| || | |||||||| ||||| |||||| Sbjct 7358782 TAATATTGTAGTTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAA 7358841 Query 176862 TAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTAC 176921 || || | | | || |||||| |||| || | || | || | || |||||||| Sbjct 7358842 CAATTCTCGTTCTTTACATTTCTTCTTTGCTGCTTGGCCTATAGTAGGTATTTGGTTTAC 7358901 Query 176922 TGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGT 176981 || | ||| | ||| ||||| |||||| | || |||||||| |||||||| || || Sbjct 7358902 CGCTTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGT 7358961 Query 176982 CTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCT 177041 | || | ||| || ||| ||| |||| ||||| ||||||| || ||||| Sbjct 7358962 AGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCT 7359021 Query 177042 TGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGC 177098 |||||||||||| ||||| || ||||||||||| || ||||| || || || ||||| Sbjct 7359022 TGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCTGC 7359078 >seq11 Length=34766867 Score = 280 bits (310), Expect = 2e-70 Identities = 381/530 (72%), Gaps = 6/530 (1%) Strand=Plus/Minus Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCA 176397 ||||| || || || |||||||| ||| | ||||| |||||| | || | || || || Sbjct 15042876 CACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAGCGGTGGTCCT 15042817 Query 176398 TACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCCAA 176454 || |||| |||| | |||||| | | ||| | ||||| ||||||| | | Sbjct 15042816 TATGAACTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTACATGGGGTGTGAG 15042760 Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 ||||||||||||| | | ||||||||||||| ||| ||||||||| || || || Sbjct 15042759 TGGGAACTTAGTTTTCGTTTGGGCATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCT 15042700 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 || | || || | || |||||| | ||||||| | ||||| ||| || || ||| Sbjct 15042699 GTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGAT 15042640 Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634 ||||||||||| | |||| |||||| ||||| |||||| ||||||| || || ||||| Sbjct 15042639 GGTATGCCTCTAAGAATTTTAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCAT 15042580 Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694 || ||||| ||||| ||||| || ||| | || ||||| ||||| || || || || || Sbjct 15042579 AATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 15042520 Query 176695 TTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAAC 176754 ||| || ||||| || | || ||||||| | | || || || || ||||| Sbjct 15042519 TTCAGTGCTATGCATGGTTCCTTGGTAACTTCTTGTTTGATCAGGGAAACCACAGAAAAT 15042460 Query 176755 GAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCT 176814 ||||| || | ||||||| ||| || ||||| ||||| || || || ||||||||| Sbjct 15042459 GAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCT 15042400 Query 176815 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAA 176864 || || ||||| ||||| || | |||||||| ||||| |||||| || Sbjct 15042399 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAA 15042350 >seq14 Length=49042192 Score = 277 bits (306), Expect = 2e-69 Identities = 380/530 (72%), Gaps = 6/530 (1%) Strand=Plus/Plus Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCA 176397 ||||| || || || |||||||| ||| | |||| |||||| | || || || | || Sbjct 41705907 CACTTTTATCCTATTTGGGAAGCGGCATCTATTGATGAATGGTTATATAACGGCGATCCT 41705966 Query 176398 TACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCCAA 176454 || |||| |||| | |||||| | | ||| | ||||| ||||||| || | Sbjct 41705967 TATGAACTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTACATGGGGCGTGAG 41706023 Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 ||||||||||||| | | || |||||||||| ||| ||||||||| || || || Sbjct 41706024 TGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCT 41706083 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 || | || || | || |||||| | ||||||| | ||||| ||| || || ||| Sbjct 41706084 GTTGCAGCCGCTACTGCTGTTTTCTTTATCTATCCTATTGGTCAGGGAAGCTTTTCAGAT 41706143 Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634 ||||||||||| || |||| |||||| ||||| |||||| ||||||| || || ||||| Sbjct 41706144 GGTATGCCTCTAGGAATTTTAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCAT 41706203 Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694 || ||||| ||||| ||||| || ||| | || ||||| ||||| || || || || || Sbjct 41706204 AATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 41706263 Query 176695 TTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAAC 176754 ||| | ||||| || | || ||||||| | | || || || || ||||| Sbjct 41706264 TTCAGTGATATGCATGGTTCCTTGGTAACTTCTTGTTTGATCAGGGAAACCACAGAAAAT 41706323 Query 176755 GAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCT 176814 ||||| || | ||||||| ||| || ||||| ||||| || || || ||||||||| Sbjct 41706324 GAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCT 41706383 Query 176815 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAA 176864 || || ||||| ||||| || | |||||||| ||||| |||||| || Sbjct 41706384 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAA 41706433 >seq2 Length=48577505 Score = 134 bits (148), Expect = 2e-26 Identities = 188/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589 || |||||| | ||||||| | ||||| ||| || || |||||||||||||| || Sbjct 24951518 GCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGA 24951459 Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649 ||||||| ||| ||||| |||||| ||||||| || || |||| || ||||| ||||| Sbjct 24951458 ATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCAT 24951399 Query 176650 CCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCAC 176709 ||||| || ||| | || ||||| ||||| || || || || || ||| || ||| | Sbjct 24951398 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTAT 24951339 Query 176710 GGAAGTCTTGTTACTTCTTCACTTG-TTAGAGAGACAACCGAAAACGAATCACAAAACTA 176768 || |||| || | || ||| | || || || || ||||| ||||| || | Sbjct 24951338 GG-TTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 24951280 Query 176769 CGGTTACAAATTCGGACAAGA 176789 ||||||| ||| || ||||| Sbjct 24951279 AGGTTACAGATTTGGTCAAGA 24951259 >seq18 Length=58018742 Score = 129 bits (142), Expect = 7e-25 Identities = 254/369 (69%), Gaps = 15/369 (4%) Strand=Plus/Minus Query 19270 TTACTCTATC----ACATATGGGTAGAAGACCTGTAACAGTACAGTATCCTTACGAGAAA 19325 |||||||||| ||| || ||| ||| ||||| | || |||||||| || ||| Sbjct 33807296 TTACTCTATCTCACACAAATCGGTT----ACCCGTAACTATTCAATATCCTTATGAAAAA 33807241 Query 19326 CTCATACCGTCAGAGAGATACCGTGGTCGTATACACTATGAGTTTGACAAGTGTATCGCC 19385 | || | ||||| | | |||||||| ||||| | ||| ||||| || || || || Sbjct 33807240 ATAATCTCATCAGAATGTTTCCGTGGTCAAATACATTTTGAATTTGATAAATGCATTGCT 33807181 Query 19386 TGTGAGGTGTGTGTAAGAGTATGCCCTATCAATCTACCAGTGGTGGATTGGGTGATGAAC 19445 ||||| || ||||| | ||||| || ||| ||||||| | || |||||| | | Sbjct 33807180 TGTGAAGTATGTGTTCGTGTATGTCCCATCGATCTACCCATTGTTGATTGGAAACT--AG 33807123 Query 19446 AAACAGACAA--AGAAGAAAGAACTTAGAAATTATTCGATAGACTTTGGAGCATGTATTT 19503 |||| || | | || ||| || | |||||| || || || ||| ||||| | Sbjct 33807122 AAACTGATATTCAAAATAAATAATTGCTTAATTATAGTATTGATTTCGGAATTTGTATAT 33807063 Query 19504 TCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCTATCCATGACAGAAGAATATG 19563 | || ||||||| | || ||||| |||||||| ||| |||| ||||| |||||||||| Sbjct 33807062 TTTGTGGTAACTATATTGAATATTGTCCAACAAATTGTTTATCAATGACCGAAGAATATG 33807003 Query 19564 AATTGGCTACATTTGACAGACATCAACTTAACTT-TGATAACGTCGCTCTTGGACGATTG 19622 || | | || | ||| | || ||| |||| || | || | | ||| |||| | ||| Sbjct 33807002 AACTTTCAACTTATGATCGCCA-CAAATTAAATTATAATCAAATTGCT-TTGGGCCATTT 33806945 Query 19623 CCCACTAAT 19631 ||| |||| Sbjct 33806944 ACCAGTAAT 33806936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603485415477120