Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 1e-12 seq10 86.0 4e-12 seq13 84.2 2e-11 >seq7 Length=44630203 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||||| ||||| || || || |||| || || ||| | Sbjct 36855588 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 36855647 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || |||||||||||| | || || | Sbjct 36855648 GACACTATTGACAAT--GTCAAAGCCAAGATTCAGGACAAAGAAGGTATCCCACCAGACC 36855705 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | |||||||| || ||||| | || || | || | |||| | ||||||| Sbjct 36855706 AACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACA 36855765 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || | || ||||| | ||| |||| || || Sbjct 36855766 ACATCCAAAAAGAATCTACCCTCCACTTGGTGCTCCGTCTGCGCGGTGG 36855814 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||||||||| ||||| | || || || ||| | Sbjct 36856044 ATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACCATTACTTTGGAGGTAGAGAGCTCA 36856103 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| || ||| |||| || | Sbjct 36856104 GACACAATTGACAAT--GTGAAGGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 36856161 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || | || || | ||| | || | || |||| Sbjct 36856162 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGACGTACACTGGCAGACTACA 36856221 Query 27968 ACATCCAAAAAGAG 27981 |||||||||| ||| Sbjct 36856222 ACATCCAAAAGGAG 36856235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||||||||| ||||| | || || || ||| | Sbjct 36855816 ATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACCATTACTTTGGAGGTAGAGAGCTCA 36855875 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| || ||| | || || | Sbjct 36855876 GACACAATTGACAAT--GTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCACCAGACC 36855933 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | |||||||| || ||||| | || || | || | |||| | ||||||| Sbjct 36855934 AACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACA 36855993 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || | || ||||| | ||| |||| || || Sbjct 36855994 ACATCCAAAAAGAATCTACCCTCCACTTGGTGCTCCGTCTGCGCGGTGG 36856042 >seq10 Length=51566898 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| |||||||| ||| || || | || || || | || Sbjct 4577244 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATCACGCTAGAGGTGGAGTCCTCC 4577185 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || ||| || || || || ||||| |||| || Sbjct 4577184 GAC-----ACAATCGATAACGTGAAAGCCAAGATTCAAGATAAGGAAGGGATTCCTCCGG 4577130 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || || || |||||||||||| | || |||| | | | | |||||| Sbjct 4577129 ATCAGCAACGTTTGATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACCCTCGCCGATT 4577070 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||||| ||| |||||||||| | ||| | || || || Sbjct 4577069 ACAATATCCAGAAAGAATCGACTCTGCATTTGGTGCTTCGTCTCCGCGGAGG 4577018 >seq13 Length=45874162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| |||||||||||||| ||||| | || || || ||| | Sbjct 29045323 ATGCAAATCTTTGTGAAGACTCTTACTGGGAAGACCATTACTTTGGAGGTAGAGAGCTCT 29045264 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || || || ||||| || ||| |||| || | Sbjct 29045263 GACACAATTGACAAT--GTGAAGGCCAAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 29045206 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| || || || | || || | ||||| || | || |||| Sbjct 29045205 AGCAAAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGACGCACGCTGGCAGACTACA 29045146 Query 27968 ACATCCAAAAAGAG 27981 |||| ||||| ||| Sbjct 29045145 ACATTCAAAAGGAG 29045132 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||||||||| ||||| | || || || ||| | Sbjct 29059257 ATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACCATTACTTTGGAGGTAGAGAGCTCT 29059198 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| || ||||| || ||| |||| || | Sbjct 29059197 GACACAATTGACAAT--GTGAAGGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 29059140 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || | || || | ||| | || | || |||| Sbjct 29059139 AGCAAAGGTTGATTTTTGCGGGAAAGCAGCTTGAAGATGGACGTACGCTGGCAGACTACA 29059080 Query 27968 ACATCCAAAAAGAG 27981 |||| ||||| ||| Sbjct 29059079 ACATTCAAAAGGAG 29059066 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || || ||| | Sbjct 29045551 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 29045492 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || |||||||||||| | || || | Sbjct 29045491 GACACTATTGACAAT--GTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACC 29045434 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | |||||||| |||||||| | || || | || | |||| | ||||||| Sbjct 29045433 AACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACA 29045374 Query 27968 ACATCCAAAAAGA 27980 ||||||| ||||| Sbjct 29045373 ACATCCAGAAAGA 29045361 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || || ||| | Sbjct 29059485 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 29059426 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || |||||||||||| | || || | Sbjct 29059425 GACACTATTGACAAT--GTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACC 29059368 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | |||||||| |||||||| | || || | || | |||| | ||||||| Sbjct 29059367 AACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACA 29059308 Query 27968 ACATCCAAAAAGA 27980 ||||||| ||||| Sbjct 29059307 ACATCCAGAAAGA 29059295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355857234546057