Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq17 100 2e-16 seq10 100 2e-16 seq1 100 2e-16 seq13 91.5 1e-13 seq7 89.7 4e-13 >seq17 Length=41641078 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||| | || || ||| || ||||| || || || || Sbjct 3124474 CATGCCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTC 3124415 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 |||||| ||||| | || ||||||||||| |||||||| ||||| | ||||||||| || Sbjct 3124414 GGCAAGGGTTCGACCATCCTCAAGCTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGG 3124355 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232 |||| | || || ||||| || || ||| | | | | || ||| |||| Sbjct 3124354 TGGGATCCCT-TCCTTGTCTTGAATCTTAGCTTTCACGTTATCGATGGTGTCGGAGGACT 3124296 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| || | ||||| | || || |||| ||||| || ||||| ||||||| Sbjct 3124295 CCACCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACGAAGATCTGCATCT 3124242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||||||| || ||| ||| || || ||||||||||| ||||| || || | || Sbjct 3125139 AACACCAAATGCAGAGTGGACTCCTTCTGGATATTATAATCAGCAAGAGTACGACCATCT 3125080 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || ||||| || || ||||| ||||| | ||||||||| | || | | |||||||||| Sbjct 3125079 TCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCTTTGTCC 3125020 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || || | | | | ||||| || || || | || || || Sbjct 3125019 TGTATCTTTGCCTTCACGTTATCGATGGTATCAGAACTTTCAACTTCTAAAGTTATTGTT 3124960 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||| || ||||||||||||||||| Sbjct 3124959 TTTCCGGTCAAAGTCTTAACAAAGATTTGCAT 3124928 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| |||||||| || | ||||| |||| || ||| || || ||||| ||||| Sbjct 3124702 CATGCCACCTCTTAAACGAAGAACCAAGTGTAAGGTAGACTCCTTCTGAATATTGTAATC 3124643 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| |||| | | || ||||| ||||| || |||||||| | | |||||| || | Sbjct 3124642 AGCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAATATCAACCTCTGCTGATCTGG 3124583 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | ||| |||||| ||| || |||| | | | || || || || Sbjct 3124582 AGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGATTC 3124523 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| | || || |||| || || |||||||||||||| Sbjct 3124522 GACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 3124472 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || || || || || || || |||||||| ||||| |||||| | || Sbjct 3124911 AAAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCTGCAAGGGTTCGTCCATCT 3124852 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||||||||| || ||||| ||||| | ||||||||| | ||| | | ||| || || Sbjct 3124851 TCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTATCT 3124792 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || ||| | | | | ||||| |||||| |||| ||||| | Sbjct 3124791 TGAATCTTGGCTTTCACATTGTCTATGGTATCTGAACTCTCCACCTCCAAGGTGATGGTC 3124732 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||||| || || || || || ||||| Sbjct 3124731 TTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 3124700 >seq10 Length=51566898 Score = 100 bits (110), Expect = 2e-16 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || ||||||||||| ||||| || ||| | || |||||||| Sbjct 4576586 TGAAGCGTGGACTCCTTCTGAATATTATAATCTGCAAGCGTGCGTCCATCCTCAAGCTGC 4576645 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || |||||||||||||| || | || | | ||| || ||| ||| | | Sbjct 4576646 TTCCCTGCGAAGATAAGACGCTGCTGATCCGGTGGAATCCCCTCCTTATCC-TGAATCTT 4576704 Query 39202 TG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || || | | | | |||||| |||||| |||| || || ||||||| || Sbjct 4576705 TGCCTTCACGTTATCGATCGTATCAGAACTCTCCACCTCCAGAGTAATCGTTTTTCCGGT 4576764 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCCGAGCACAATGCAC 39306 ||||| || || ||||| |||||| | ||| ||| || | |||| Sbjct 4576765 GAGCGTCTTCACGAAGATCTGCATCCCTCCGCGGAG-ACGAAGCAC 4576809 >seq1 Length=56831395 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 3099059 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 3099000 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || ||||||||||| | || | || || |||||| ||| || Sbjct 3098999 TTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 3098940 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | || || |||||||| |||| |||||| |||| ||||| Sbjct 3098939 GCCTTCA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCCAACGTGATCGTTTTACCCGT 3098881 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 || ||||| || ||||| |||||| | |||||| Sbjct 3098880 TAGGGTTTTCACGAAGATCTGCATCGTGACGCCG 3098847 >seq13 Length=45874162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| ||||| || ||||| |||||||| || |||| |||| || Sbjct 25114703 CACCAGATGAAGCGTCGATTCTTTCTGAATATTGTAATCGGCGAGGGTTCTGCCGTCTTC 25114762 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || | ||||||||||| | || | || || |||||| Sbjct 25114763 GAGCTGTTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTG 25114822 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | | || || ||||| || || | ||| || |||| Sbjct 25114823 GATCTTAGCTTTCACGTTATCGATGGTGTCAGAGGACTCGACCTCTAGCGTAATCGTTTT 25114882 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| || ||||||||||| Sbjct 25114883 ACCGGTTAGGGTTTTGACGAAGATTTGCAT 25114912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||| | ||| || || || ||||| || || ||||| Sbjct 23083703 CATGCCACCCCTGAGGCGAAGCACGAGATGGAGGGTTGATTCCTTTTGGATGTTGTAATC 23083762 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 |||||| || || | || ||||| ||||| |||||||| ||||| | ||||||||| || Sbjct 23083763 GGCAAGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGG 23083822 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGAC 39231 |||| | || || |||| | ||| | | | || ||| | | | || ||| || Sbjct 23083823 TGGGATCCCT-TCCTTGT-CTTGAATCTTAGCTTTTACGTTGTCAATGGTGTCGGAGGAT 23083880 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| || | ||||| | || || |||| ||||| || || || ||||||| Sbjct 23083881 TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTCACGAATATCTGCATCT 23083935 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||| | ||| || || || ||||| || || ||||| Sbjct 23088171 CATGCCACCCCTGAGGCGAAGCACGAGATGGAGGGTTGATTCCTTTTGGATGTTGTAATC 23088230 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 |||||| || || | || ||||| ||||| |||||||| ||||| | ||||||||| || Sbjct 23088231 GGCAAGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGG 23088290 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGAC 39231 |||| | || || |||| | ||| | | | || ||| | | | || ||| || Sbjct 23088291 TGGGATCCCT-TCCTTGT-CTTGAATCTTAGCTTTTACGTTGTCAATGGTGTCGGAGGAT 23088348 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| || | ||||| | || || |||| ||||| || || || ||||||| Sbjct 23088349 TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTTACGAATATCTGCATCT 23088403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| |||||| || || || ||||||||||| || || | || || Sbjct 29045570 CACCAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCGGCAAGGGTACGGCCATCCTC 29045629 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||| || ||||| || || | ||| ||||| |||||| | | |||||||| Sbjct 29045630 AAGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGG-ATACCTTCTTTGTCTT 29045688 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || || ||||| | | | || || ||| |||||| || | ||||| Sbjct 29045689 GAATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCT---CTCCACCTCAAGGGTGATGG 29045745 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || || |||||||||||||| Sbjct 29045746 TCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 29045779 >seq7 Length=44630203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || |||||||| || || ||||| || | ||||| | || || Sbjct 36855797 CACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCCAAGGTTCGGCCATCTTC 36855738 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||||||||| ||||| || || | ||| ||||| |||||| | | ||||||||| Sbjct 36855737 AAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGG-ATACCTTCTTTGTCCT 36855679 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || || ||||| | | | || || ||| |||||| || | ||||| Sbjct 36855678 GAATCTTGGCTTTGACATTGTCAATAGTGTCAGAGCT---CTCCACCTCAAGGGTGATGG 36855622 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | ||||| || || || || ||||||||||||||| Sbjct 36855621 TCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATC 36855587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| || || || || ||||| ||||| || || | || ||| Sbjct 36855340 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCATCCTCA 36855281 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || ||||| || || | ||| || || | || | | |||||||||| || Sbjct 36855280 AGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGATCTGGAGGGATACCCTCTTTGTCC-TG 36855222 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 | | | | | | ||| | || | | ||| ||| || || | ||||| | || Sbjct 36855221 AATCTTAGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCGACCTCAAGGGTGATTGTCTT 36855162 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||||||| || |||||||||||||||||| Sbjct 36855161 TCCCGTCAAGGTCTTAACAAAGATTTGCATC 36855131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429539365011383