Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq13 116 3e-21 seq10 116 3e-21 seq7 116 3e-21 seq1 104 2e-17 seq15 82.4 5e-11 >seq13 Length=45874162 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| ||||| || ||||| || || || || | | Sbjct 29045779 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 29045720 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | || |||||||||||| | || ||||| || Sbjct 29045719 GACACTATTGACAATGTCAAAGCTAAGA-TTCAAGACAAAGAAGGTATCCCACCAGACCA 29045661 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || ||||| || || || | || || | | ||||||||| Sbjct 29045660 ACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGTACCCTTGCCGATTACAA 29045601 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 29045600 CATTCAGAAAGAGTCCAC 29045583 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| ||||| || ||||| || || || || | | Sbjct 29045551 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 29045492 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | || |||||||||||| | || ||||| || Sbjct 29045491 GACACTATTGACAATGTCAAAGCTAAGA-TTCAAGACAAAGAAGGTATCCCACCAGACCA 29045433 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || ||||| || ||||| | || || || | |||||||| Sbjct 29045432 ACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACAA 29045373 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 29045372 CATCCAGAAAGAATCTAC 29045355 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| ||||| || ||||| || || || || | | Sbjct 29059485 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 29059426 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | || |||||||||||| | || ||||| || Sbjct 29059425 GACACTATTGACAATGTCAAAGCTAAGA-TTCAAGACAAAGAAGGTATCCCACCAGACCA 29059367 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || ||||| || ||||| | || || || | |||||||| Sbjct 29059366 ACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACAA 29059307 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 29059306 CATCCAGAAAGAATCTAC 29059289 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || || || ||||| || || || || ||| | Sbjct 23083933 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23083874 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| || ||| ||||| ||||| | || || || || Sbjct 23083873 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 23083814 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || |||||||| || || | ||||| | | |||||||||| Sbjct 23083813 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 23083754 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 23083753 ATCCAAAAGGAATCAAC 23083737 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || || || ||||| || || || || ||| | Sbjct 23088401 ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23088342 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| || ||| ||||| ||||| | || || || || Sbjct 23088341 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 23088282 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || |||||||| || || | ||||| | | |||||||||| Sbjct 23088281 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 23088222 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 23088221 ATCCAAAAGGAATCAAC 23088205 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || ||||| || || || || ||| || Sbjct 23088173 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 23088114 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | |||||||| || | || |||||||| Sbjct 23088113 GACACCATTGATAATGTTAAGGCCAAGA-TCCAGGACAAAGAGGGCATCCCCCCAGATCA 23088055 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| |||||||| || || | | | || | | |||||||| Sbjct 23088054 GCAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAA 23087995 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 23087994 CATTCAGAAGGAATCCAC 23087977 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || ||||| || || || ||||| || || || || | Sbjct 29046463 ATGCAAATCTTCGTTAAGACACTCACTGGTAAGACAATCACCCTTGAGGTGGAGAGTTCA 29046404 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| || ||| ||||| ||||| | || ||||| || Sbjct 29046403 GATACCATAGATAATGTAAAGTCCAAGATTCAAGACAAGGAAGGGATCCCACCAGACCAG 29046344 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| ||||| || || || || | ||| || | | ||||||||| Sbjct 29046343 CAACGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGACGTACACTTGCTGATTACAAC 29046284 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 29046283 ATCCAAAAGGAGTCCAC 29046267 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || ||||| || || || ||||| || || || || | Sbjct 29060169 ATGCAAATCTTTGTTAAGACACTCACTGGTAAGACAATCACCCTTGAGGTGGAGAGTTCA 29060110 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| || ||| ||||| ||||| | || ||||| || Sbjct 29060109 GATACCATAGATAATGTAAAGTCCAAGATTCAAGACAAGGAAGGGATCCCACCAGACCAG 29060050 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| ||||| || || || || | ||| || | | ||||||||| Sbjct 29060049 CAACGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGACGTACACTTGCTGATTACAAC 29059990 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| |||||||| |||| || || Sbjct 29059989 ATTCAAAAGGAGTCCACTCTACACTTGGT 29059961 >seq10 Length=51566898 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || |||||||| | || || || ||| | Sbjct 4577472 ATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACGATCACCTTGGAGGTGGAGTCCTCT 4577413 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| ||||| || || | || || |||||| Sbjct 4577412 GACACCATCGACAACGTGAAGGCCAAAATCCAAGACAAGGAGGGCATTCCTCCGGATCAA 4577353 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| || ||||| ||||| || ||||||| | || | | ||| |||||| Sbjct 4577352 CAGCGTTTAATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTCGCCGACTACAAC 4577293 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 4577292 ATCCAAAAGGAGTCCAC 4577276 >seq7 Length=44630203 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| ||||| || ||||| || || || || | | Sbjct 36855588 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 36855647 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | || |||||||||||| | || ||||| || Sbjct 36855648 GACACTATTGACAATGTCAAAGCCAAGA-TTCAGGACAAAGAAGGTATCCCACCAGACCA 36855706 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| |||||||| || ||||| | || || || | |||||||| Sbjct 36855707 ACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACAA 36855766 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| || || Sbjct 36855767 CATCCAAAAAGAATCTAC 36855784 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| |||||||| || || || |||||||||||||| || | Sbjct 36854904 ATGCAAATCTTCGTTAAGACCCTCACTGGTAAGACCATCACTCTCGAAGTCGAGAGTTCA 36854963 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| |||||| ||||| ||||| | || |||||||| Sbjct 36854964 GATACCATAGACAATGTAAAGGCCAAAATTCAAGACAAGGAAGGGATCCCACCAGATCAG 36855023 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||| ||||| || || || || | ||| || | | ||||| ||| Sbjct 36855024 CAACGGCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGACGTACCCTTGCTGATTATAAC 36855083 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| |||||||| | || || ||| Sbjct 36855084 ATCCAAAAGGAGTCCACTCTCCACTTGGTT 36855113 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || ||||| || || || ||||| || ||||| || || || || | | Sbjct 36855359 AATGCAAATCTTTGTTAAGACTCTGACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTC 36855418 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| |||| | || | || |||||||| ||| | || ||||||| Sbjct 36855419 TGACACCATTGACAATGTTAAGGCTAAGA-TTCAGGACAAAGAGGGTATCCCACCAGATC 36855477 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || ||||| || || || || || || | || || | | ||||||| Sbjct 36855478 AACAGAGGCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTGCTGATTACA 36855537 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| || || |||||||| | || || ||| Sbjct 36855538 ACATCCAGAAGGAGTCCACTCTTCACTTGGTT 36855569 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| ||| | |||||||| || ||||| || || || || | | Sbjct 36855132 ATGCAAATCTTTGTTAAGACCTTGACGGGAAAGACAATCACCCTTGAGGTCGAGAGCTCC 36855191 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | || |||||||| ||| | || |||||||| Sbjct 36855192 GACACCATTGACAACGTTAAGGCTAAGA-TTCAGGACAAAGAGGGTATCCCTCCAGATCA 36855250 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || || || || || || | || || | | |||||||| Sbjct 36855251 ACAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTGCTGATTACAA 36855310 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 36855311 CATCCAGAAGGAGTCCAC 36855328 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || || || || || ||| | || || || | | Sbjct 36855816 ATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACCATTACTTTGGAGGTAGAGAGCTCA 36855875 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||| || ||| | || ||||| || Sbjct 36855876 GACACAATTGACAATGTGAAGGCAAAGA-TCCAAGACAAGGAGGGTATCCCACCAGACCA 36855934 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| |||||||| || ||||| | || || || | |||||||| Sbjct 36855935 ACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACAA 36855994 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| || || Sbjct 36855995 CATCCAAAAAGAATCTAC 36856012 >seq1 Length=56831395 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| ||||||||||| | || || || || || Sbjct 3098857 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACGTTGGAGGTGGAGTCTTCG 3098916 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || || || || Sbjct 3098917 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAG 3098976 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || || ||||| |||| ||||| | | ||| |||||| Sbjct 3098977 CAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTACAAC 3099036 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 3099037 ATCCAGAAGGAGTCCAC 3099053 >seq15 Length=51756343 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || || || || ||| | || || ||||| || || || |||||| Sbjct 49153884 GACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAA 49153943 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | |||||| | | ||||| ||||||||||| || || ||| | || || || || Sbjct 49153944 GATGGTCGCACTCTTGCTGATTATAACATACAAAAGGAATCAACACTTCACTTGGTCTTG 49154003 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | | |||||| Sbjct 49154004 AGGCTCAGGGGAGGA 49154018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004693685028