Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 123 3e-23 seq5 113 6e-20 seq20 111 2e-19 seq4 111 2e-19 seq16 102 1e-16 seq6 100 4e-16 seq8 91.5 2e-13 seq19 87.8 2e-12 >seq3 Length=45779434 Score = 123 bits (136), Expect = 3e-23 Identities = 236/344 (69%), Gaps = 8/344 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || || || || ||||| || ||||||| || | |||||| || || ||||| Sbjct 40573252 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 40573193 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAG-ATCCAGAAAAGA 48258 || ||||||| ||||| || |||||||||||||| | ||| |||| ||| || |||| Sbjct 40573192 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAAAAGCTTCCGGAGAAGA 40573134 Query 48259 ATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC---GTTGT 48315 |||| || || ||| || ||||| || | ||| || | || ||| | | Sbjct 40573133 ATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAA---GGATTCTGAGGCAT 40573077 Query 48316 GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| || | ||||| | || || || | | || || || || | ||| || Sbjct 40573076 CGATCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGC 40573017 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||| ||| |||||||| || ||||| | ||| || |||| | || || |||| Sbjct 40573016 GAAACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACA 40572957 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 |||||||||| |||||||| || || || || || ||||| ||| Sbjct 40572956 TTTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 40572913 >seq5 Length=42234498 Score = 113 bits (124), Expect = 6e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | ||| ||||||||||| || |||||| | | ||| | | | | Sbjct 37338157 GTTCCTGCATTGAAAAGTGTTGGAGATGCATGAGTGAACCATCTCTGAGACATCATGTGG 37338216 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||| | ||| || || ||||| | ||||||||| || || || | ||||||| Sbjct 37338217 TATGTTCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATCAAC 37338276 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || |||||||| ||||| || ||| | | ||||| | |||||| | || | | Sbjct 37338277 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTATGACCTCTCAAGA 37338336 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || |||||| || || || || || Sbjct 37338337 GTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATAGATTAT 37338383 Score = 109 bits (120), Expect = 8e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||||||||||||||| || | |||||||| || ||||| |||| |||| || Sbjct 37337299 TCTCTTTCATATTGAGTGTACAATTTCTCAAATTCTTCACCCCAGCAATCAGCCAAACCT 37337358 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||||| ||||| | ||| ||||| | |||| || ||||| || ||||||| Sbjct 37337359 GGCGCTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAAG 37337418 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||| | ||| |||||| ||| | |||||| | || ||| ||||| Sbjct 37337419 AGATCAGACACCCAAAGAGCATAAAACAAATCTCGAGCTCGATGCTCTTC 37337468 >seq20 Length=47900577 Score = 111 bits (122), Expect = 2e-19 Identities = 232/343 (68%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || || || | ||||| || ||||||| || ||||| || || || ||||| Sbjct 3442305 ACACGCGAAGTCGTAGTGAAGCCCCTCATCTCGCGAGATGAATTCATTGGAGAAGGTGAG 3442364 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || | ||||| || || || |||||||||||||| || ||| ||| || ||||| Sbjct 3442365 CCCTGACATTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAA 3442424 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC---GTTGTG 48316 ||| |||| ||| || ||||| | || | |||| || | || ||| | || Sbjct 3442425 TATTCCTTAGACGCAAGCGAATGCCATGAGGCGCTCTGCGAA---GGATTCTGAGGCGTT 3442481 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||| || | | ||||| | || || || | | || || || || | ||| ||| Sbjct 3442482 GATCTACTGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCACG 3442541 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||| | | | ||||||| || ||||| ||| || |||| || || || ||||| Sbjct 3442542 AAACAAACAATTTTTTT-TGTGGAGTCTTTGGTGTAGGTTTCTAAGAAGAGGCTGTACAT 3442600 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 ||||||||| |||||||| || || || || || ||||| ||| Sbjct 3442601 TTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 3442643 >seq4 Length=52388848 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | ||||||||||||||| ||||||||| || ||| | | | | Sbjct 48824723 GTTCCAGCATTGAAAAGTGTCGGAGATGCATGAGTAAACCATCGTTGAGACATCATGTGG 48824664 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| || || || |||||||| | ||| ||||| || || || || | |||||| Sbjct 48824663 TATGTTTTGATGGCAGAATCTATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 48824605 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||| ||||| || ||| | | ||||| | ||| || | || | Sbjct 48824604 CATGTGTTGAGGCCTTTCCACAACCTTCCCTTGAACCTTCAAGAGGTAAGACCTCTCAAG 48824545 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| || |||||||| | || ||||||||| || || || || Sbjct 48824544 GGTTTTGAATCCAAAATAATCATAGTCAAAGTCTCTGTCATAGATTAT 48824497 Score = 105 bits (116), Expect = 9e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||| | ||| || | ||| | || | ||||||||||| ||| || Sbjct 48825096 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCCA 48825037 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || || |||||||| ||| ||||||||| || | || ||||| | | |||||| Sbjct 48825036 TTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGAG 48824977 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||||| || ||||| || Sbjct 48824976 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATATC 48824917 Query 78339 CCCTCTATACTGTCATCCATCAT 78361 ||||||||||| ||||| |||| Sbjct 48824916 CCCTCTATACTATCATCTTTCAT 48824894 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 |||||||||||| || ||| ||| ||||||| || |||||| |||| |||| || Sbjct 48825551 TCTCTTTCATATCGATGATAAAGCTCCTCAAATTTCTCACCCCAACAATCAGCCAAACCT 48825492 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||| | || || | ||| ||||| | |||| || ||||| || ||||||| Sbjct 48825491 GGTGCTTCACTGGGACAAAACAAAGACCATTGGCCATTGCTCTGAACTCTTTCCATAAAG 48825432 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| |||||| ||| |||||||| | | ||| ||||| Sbjct 48825431 AGATCAGGCACCCAAAGAGCATAAAACAGATCTCGAGCACGATGCTCTTC 48825382 >seq16 Length=37887014 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||||||||||||||||||||| | |||| ||| || || || ||||| Sbjct 5526489 ACAAGCGAAATCACAATGAAGACCTTCATCGCGTGATATTAGTTCATTTGAGAAAGTGAG 5526548 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 |||||||| |||||||||||||||||||| || | || ||| ||| || ||||| Sbjct 5526549 TCCGGGCATGAGTCCACGTTTTTTGAGCCAGAAGACAGCGCAGAAGCTTCCGGAGAAGAA 5526608 Query 48260 TATGCCTTC 48268 || ||||| Sbjct 5526609 GATACCTTC 5526617 >seq6 Length=51416163 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||||||||||||| ||| ||| ||||||| || |||||| ||| ||| || Sbjct 12138696 TCTCTTTCATATTGAAGATAAAGCTCCTCAAATTTCTCACCCCAACAATCTGTCAAACCC 12138755 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||| | || || | ||| ||||| | |||| || ||||| || ||||||| Sbjct 12138756 GGTGCTTCACTGGGACAAAACAAAGACCATTGGCCATTGCTCTGAACTCTTTCCATAAAG 12138815 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| |||||| ||| |||||||| | | ||| ||||| Sbjct 12138816 AGATCAGGCACCCAGAGAGCATAAAACAGATCTCGAGCACGATGCTCTTC 12138865 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||| | ||| || | ||| | || | |||||| || | ||| || Sbjct 12139155 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGGGACAATGCCA 12139214 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||| ||| ||||||||| || | || ||||| | | ||| || Sbjct 12139215 TTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATAGAG 12139274 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||||| || || || || Sbjct 12139275 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATATC 12139334 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||||||||| ||||| ||||| | ||| || || ||| Sbjct 12139335 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 12139376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | ||||||||||||||| || |||||| || ||| | | | | Sbjct 12139524 GTTCCAGCATTGAAAAGTGTCGGAGATGCATGGGTGAACCATCGTTGAGACATCATGTGG 12139583 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| | ||| || |||||||| | ||| ||||| || || || || | |||||| Sbjct 12139584 TAAGTTTTGACAGCAGAATCTATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 12139642 Query 78518 CATATGCTGAGGTCTTTC---AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 78574 ||| || ||||| ||||| |||| | | | | ||||| | ||| || | || Sbjct 12139643 CATGTGTTGAGGCCTTTCCAAAACCTGCCCTTGA---ACCTTCAAGAGGTAAGACCTCTC 12139699 Query 78575 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | ||||| || |||||||| | || |||||| || || || || || Sbjct 12139700 AAGGGTTTTGAATCCAAAATAATCATAGTCAAAGTCCCTGTCATAGATTAT 12139750 >seq8 Length=47837022 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG 78462 ||| ||| || | ||| ||||||||||| ||||||||| | | ||| | | | ||| | Sbjct 11047978 CTGTATTGAAAAGTGTTGGAGATGCATGAGTAAACCATCTCTGAGACATCATGTGGTAAG 11048037 Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522 || | ||| || || ||||| | ||||||||| || | || | ||||||||| | Sbjct 11048038 TTCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAACAACCCTCATCAACATGT 11048097 Query 78523 GCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 78582 ||||||| ||||| || ||| | | |||| | |||||| | || | |||| Sbjct 11048098 GCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAGGATGTATGACCTCTCAAGGGTTT 11048157 Query 78583 TAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | |||||||| || | || ||||||||| || || || || Sbjct 11048158 TGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATTAT 11048200 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAAC-----ATCATCCA 77952 ||||||||||| ||||| || || |||||||| || ||||| | |||| ||| Sbjct 11047139 TCTCTTTCATACTGAGTGTAGAGTTTCTCAAATTCTTCACCCCACCCTAGCAATCAGCCA 11047198 Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 | || || |||||| ||||| | ||| ||||| | |||| || ||||| || || Sbjct 11047199 AACCTGGCACTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCA 11047258 Query 78013 TAAAGAGATCAGGTATCCATAGAGCA-ATAAATAGATCTCG 78052 |||||| ||||| | ||| |||||| | ||| | |||||| Sbjct 11047259 TAAAGATATCAGACACCCAAAGAGCATAGAAAAAAATCTCG 11047299 >seq19 Length=50746504 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||| || || || ||||| || | | ||| | |||||| || || ||||| Sbjct 32416634 ACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGTGAG 32416575 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| ||||| |||||||||||||| || || || ||| |||||| ||||| Sbjct 32416574 CCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAGCGCAGAAGCTTCCAGAGAAGAA 32416515 Query 48260 TATGCCTT 48267 || |||| Sbjct 32416514 AATACCTT 32416507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694658458118240