Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq4 123 4e-23 seq5 113 6e-20 seq3 111 2e-19 seq8 95.1 2e-14 seq16 93.3 6e-14 seq19 91.5 2e-13 seq7 86.0 9e-12 >seq6 Length=51416163 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||| | ||| | || | |||||| || | |||||| Sbjct 12139155 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGGGACAATGCCA 12139214 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| ||||||||| || |||||||| | | |||||| Sbjct 12139215 TTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATAGAG 12139274 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 12139275 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATATC 12139334 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||||||||| ||||| | ||| || || ||| Sbjct 12139335 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 12139376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||||||||| ||| | | ||||||| || |||||| ||| |||||| Sbjct 12138696 TCTCTTTCATATTGAAGATAAAGCTCCTCAAATTTCTCACCCCAACAATCTGTCAAACCC 12138755 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||| | ||||| | ||| ||||| | |||| || ||| | || ||||||| Sbjct 12138756 GGTGCTTCACTGGGACAAAACAAAGACCATTGGCCATTGCTCTGAACTCTTTCCATAAAG 12138815 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | ||| |||||| ||| |||||||| Sbjct 12138816 AGATCAGGCACCCAGAGAGCATAAAACAGATCTCG 12138850 >seq4 Length=52388848 Score = 123 bits (136), Expect = 4e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||| | ||| | || | ||||||||||| |||||| Sbjct 48825096 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCCA 48825037 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||| ||| ||||||||| || |||||||| | | ||| || Sbjct 48825036 TTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGAG 48824977 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||||| || || || || Sbjct 48824976 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATATC 48824917 Query 76934 CCCTCTATACTATCATCCATCAT 76956 ||||||||||||||||| |||| Sbjct 48824916 CCCTCTATACTATCATCTTTCAT 48824894 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | ||| |||||||||||||| |||||| || ||| | | | | Sbjct 48824723 GTTCCAGCATTGAAAAGTGTCGGAGATGCATGAGTAAACCATCGTTGAGACATCATGTGG 48824664 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| || | | ||||| || | ||| ||||| || ||||| || | |||||| Sbjct 48824663 TATGTTTTGATGGCAGAATCTATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 48824605 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| ||| | | ||||| | ||| || | || | Sbjct 48824604 CATGTGTTGAGGCCTTTCCACAACCTTCCCTTGAACCTTCAAGAGGTAAGACCTCTCAAG 48824545 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || |||||||| | || ||||||||| || || || || Sbjct 48824544 GGTTTTGAATCCAAAATAATCATAGTCAAAGTCTCTGTCATAGATTAT 48824497 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||||||| | ||| | | ||||||| || |||||| |||| ||||||| Sbjct 48825551 TCTCTTTCATATCGATGATAAAGCTCCTCAAATTTCTCACCCCAACAATCAGCCAAACCT 48825492 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||| | ||||| | ||| ||||| | |||| || ||| | || ||||||| Sbjct 48825491 GGTGCTTCACTGGGACAAAACAAAGACCATTGGCCATTGCTCTGAACTCTTTCCATAAAG 48825432 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | ||| |||||| ||| |||||||| Sbjct 48825431 AGATCAGGCACCCAAAGAGCATAAAACAGATCTCG 48825397 >seq5 Length=42234498 Score = 113 bits (124), Expect = 6e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | ||| ||||||||||||||||||||| | | ||| | | | | Sbjct 37338157 GTTCCTGCATTGAAAAGTGTTGGAGATGCATGAGTGAACCATCTCTGAGACATCATGTGG 37338216 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||| | | | | || || || | ||||||||| ||||| || | ||||||| Sbjct 37338217 TATGTTCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATCAAC 37338276 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || |||||||| | ||| ||| ||| | | ||||| | |||||| | || | | Sbjct 37338277 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTATGACCTCTCAAGA 37338336 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||| || || || || || Sbjct 37338337 GTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATAGATTAT 37338383 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||||||||| || || || |||||||| || ||||| |||| ||||||| Sbjct 37337299 TCTCTTTCATATTGAGTGTACAATTTCTCAAATTCTTCACCCCAGCAATCAGCCAAACCT 37337358 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||||| || || | ||| ||||| | |||| || ||| | || ||||||| Sbjct 37337359 GGCGCTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAAG 37337418 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||| | ||| |||||| ||| | |||||| | || | | ||||| Sbjct 37337419 AGATCAGACACCCAAAGAGCATAAAACAAATCTCGAGCTCGATGCTCTTC 37337468 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | || | || | || |||||||| ||| || Sbjct 37337784 CCCCCTTGATCAACATAGCGAGCAGTATCGTTGAACACACGCAGCATTGGAACAATACCA 37337843 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| || |||||||| |||||||| || || | Sbjct 37337844 TTTGATGTCCCATTTGTGCCACGGATGTAACTTCCTGTGGCACGAATGTTGTGAACACTA 37337903 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | ||||| ||||| |||||||| || Sbjct 37337904 ACACCAATTCCTCCAGCTGATTTGCTAATGACTGCACACTCCTTCAAAGTGTCATATATT 37337963 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||||||||| ||||| | ||| || || ||| Sbjct 37337964 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 37338005 >seq3 Length=45779434 Score = 111 bits (122), Expect = 2e-19 Identities = 235/347 (68%), Gaps = 14/347 (4%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| || || || || ||||| || ||||||| || | |||||| || || ||||| Sbjct 40573252 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 40573193 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG-ATCCAGAAAAGA 46747 ||| ||||||| |||||||| |||||||||||||| | ||| |||| ||| || |||| Sbjct 40573192 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAAAAGCTTCCGGAGAAGA 40573134 Query 46748 ATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACT----GGCATCAT 46801 |||| || || || |||||||| || || | ||| || | | | |||||| Sbjct 40573133 ATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGAGGCATC-- 40573076 Query 46802 TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 ||||| | | ||||| | || ||||| | | || || || || | ||| | Sbjct 40573075 ----GATCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGG 40573020 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 | ||| ||| |||||||| ||||| | || || |||| | || || | Sbjct 40573019 CGCGAAACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGT 40572960 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTaaaaa 46968 ||||||| || || || ||||| || || || || || ||||| ||| Sbjct 40572959 ACATTTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 40572913 >seq8 Length=47837022 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | ||||| | ||| | || | || |||||||| ||| || Sbjct 11047603 CCCCCCTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACCA 11047662 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||| ||| || |||| ||||| || ||| |||| || |||| Sbjct 11047663 TTTGATGTCCCAGGTGTGGCACAAATGTAACTGCCTGTGGCATGAATGTTGTGAATACTA 11047722 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| ||| || | | |||| ||||| |||||||| || Sbjct 11047723 ACACCAATTCCTCCTGCTGATTTGCTAATGACAACACACTCCTTCAAAGTGTCATATATT 11047782 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||||| ||| ||||| | ||| || || ||| Sbjct 11047783 CCCTCTATACTATAATCTTTCATGCACACAAGGAAGCAACTA 11047824 >seq16 Length=37887014 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| || |||||||||||||| |||||||| | |||| ||| || || || ||||| Sbjct 5526489 ACAAGCGAAATCACAATGAAGACCTTCATCGCGTGATATTAGTTCATTTGAGAAAGTGAG 5526548 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 || ||||| |||||||| ||||||||||| || | ||| ||| ||| || ||||| Sbjct 5526549 TCCGGGCATGAGTCCACGTTTTTTGAGCCAGAAGACAGCGCAGAAGCTTCCGGAGAAGAA 5526608 Query 46749 TATGCCTTC 46757 || ||||| Sbjct 5526609 GATACCTTC 5526617 >seq19 Length=50746504 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| || ||||| || || || ||||| || | | ||| | |||||| || || ||||| Sbjct 32416634 ACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGTGAG 32416575 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 ||| ||||| ||||| || ||||||||||| || ||||| ||| |||||| ||||| Sbjct 32416574 CCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAGCGCAGAAGCTTCCAGAGAAGAA 32416515 Query 46749 TATGCCTT 46756 || |||| Sbjct 32416514 AATACCTT 32416507 >seq7 Length=44630203 Score = 86.0 bits (94), Expect = 9e-12 Identities = 117/163 (72%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 ||| || |||||| || || || ||||| |||||||||| || | ||||||||| | Sbjct 25224183 ACAATAGACATGCGAAGTCGCAGTGAAGCCCTTCATCTCATGAGATGAGTTCGTTAGAGA 25224124 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | |||||||| ||||| ||| ||| | |||||||||||| | | | ||||| Sbjct 25224123 AGGTGAGCCC---CATTAACTCACACTTCTCGAGCCAAAATATCACACAGTAGCTTCCAG 25224067 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784 | |||||||| ||||| | |||||||| || || | ||| Sbjct 25224066 AGAAGAATATTCCTTCGATGCAAGCGAATGCCACGAGGCGCTC 25224024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| |||||||||||||||||||| ||||||||| |||| || || || ||||| | Sbjct 43230729 ACAAGCAAAATCACAATGAAGGCCCTCATCTCTAGAGATTAGCTCATTTGAGAATGTCAA 43230670 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 || ||||| | ||| | |||||| ||||| ||||| || Sbjct 43230669 ACCTGGCATCAATCCTCTCTTTTTAAGCCAGAATATGGC 43230631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712923786189120