Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20448 105 8e-18 seq6459 96.9 4e-15 seq26036 93.3 5e-14 seq27061 84.2 3e-11 >seq20448 Length=1126904 Score = 105 bits (116), Expect = 8e-18 Identities = 232/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| ||||| |||||||| || ||||| |||| || | ||||||||| || ||||| Sbjct 920639 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 920580 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 24252 || ||||||| |||||||| || ||||||||||| | |||| || ||| || |||| Sbjct 920579 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGA 920521 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT--GTCATG 24310 | ||||| || || || || || | || | |||| | | || | ||| Sbjct 920520 ATATTCCCTCGACGCAAGCGAATGCCACGAGGC--GCTCCGCGAAGGATTCTGAGGCATC 920463 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | ||||| | ||| || || | | || || || || | ||| || Sbjct 920462 GATCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCG 920403 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||| ||| |||||||| | ||||| | || || || | | || || ||||| Sbjct 920402 AAACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACAT 920343 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 ||| || || || ||||| ||||| ||||| || ||||||||| Sbjct 920342 TTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 920300 >seq6459 Length=330141 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| ||||||||||||||||| || ||||| | | ||| | |||||| || || || Sbjct 144173 CAGACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGT 144114 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249 ||| || ||||| || || || ||||| ||||| || || | |||| || |||||| | Sbjct 144113 GAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAG-CGCAGAAGCTTCCAGAGA 144055 Query 24250 AGAAAATTCCTT 24261 ||||||| |||| Sbjct 144054 AGAAAATACCTT 144043 >seq26036 Length=1795852 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 || |||| ||| |||||||| | || | || || | ||| | || | |||||| || Sbjct 175813 CCTTTTGCCTCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGG 175872 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294 || ||| |||||||||| ||||| ||||| ||||| || || | |||||||| | Sbjct 175873 AACAATGCCATTGGATGTCCCATTTGTCCCACGAATATAACTACCTGTAGCACGAATGTC 175932 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | ||| || | ||| || || || || ||| ||| | || || || || || Sbjct 175933 ATGAATAGAGACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGT 175992 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATG 54388 ||||| || ||||||||||||||||| ||||| Sbjct 175993 TTCATATATCCCCTCTATACTATCATCTTTCATG 176026 >seq27061 Length=934220 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| |||||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 848516 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCC 848575 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||| | ||||| ||||| ||||| || || | |||||||| | | ||| || Sbjct 848576 ATTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGA 848635 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| ||| | || || || || || || || || Sbjct 848636 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATAT 848695 Query 54364 GCCCTCTATACTATCATCCATCAT 54387 ||||||||||||||||| |||| Sbjct 848696 CCCCTCTATACTATCATCTTTCAT 848719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593475428181600