Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq25741 111 1e-19 seq3517 104 2e-17 seq7180 91.5 1e-13 seq21071 89.7 4e-13 >seq25741 Length=849835 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || |||||||| || || || || ||| || || | | Sbjct 273893 AATGCAAATCTTTGTTAAGACATTGACCGGAAAGACAATCACCCTTGAGGTCGAGAGCTC 273952 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || ||||| || ||| || ||||| ||| | || ||| || Sbjct 273953 TGACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 274012 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| ||||||||||| || || || || |||||| || ||| |||| |||||||| Sbjct 274013 ACAAAGGCTTATCTTTGCAGGAAAGCAGCTAGAAGATGGCAGAACCTTGGCTGATTACAA 274072 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||| |||||||||||||| || ||| ||||| | || | || || ||| Sbjct 274073 TATCCAGAAGGAATCTACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGG 274121 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || || ||||| || || || || ||| || || | | Sbjct 297093 AATGCAAATCTTTGTTAAGACCTTGACCGGAAAGACAATCACCCTTGAGGTCGAGAGCTC 297034 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || ||||| || ||| || ||||| ||| | || ||| || Sbjct 297033 TGACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 296974 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| ||||||||||| || || || || |||||| || ||| |||| |||||||| Sbjct 296973 ACAAAGGCTTATCTTTGCAGGAAAGCAGCTAGAAGATGGCAGAACCTTGGCTGATTACAA 296914 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||| |||||||||||||| || ||| ||||| | || | || || ||| Sbjct 296913 TATCCAGAAGGAATCTACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGG 296865 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| || ||||| || ||| || ||| || Sbjct 275034 ATGCAGATCTTTGTGAAGACTTTGACAGGGAAAACTATCACCTTGGAGGTTGAAAGTTCA 275093 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || || |||||| | ||| ||| ||| Sbjct 275094 GACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGTATCCCCCCAGACCAA 275153 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || |||||||| ||| | ||| | || || ||||| Sbjct 275154 CAGAGGTTGATCTTTGCTGGGAAGCAACTGGAGGATGGAAGGACTCTTGCTGACTACAAC 275213 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGT 29190 |||||||| || |||||||||||| | || || || | || || |||| Sbjct 275214 ATTCAGAAAGAGTCTACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGGT 275262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| || ||||| || ||| || ||| || Sbjct 296180 ATGCAGATCTTTGTGAAGACTTTGACAGGGAAAACTATCACCTTGGAGGTTGAAAGTTCA 296121 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || || |||||| | ||| ||| ||| Sbjct 296120 GACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGTATCCCCCCAGACCAA 296061 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || |||||||| ||| | ||| | || || ||||| Sbjct 296060 CAGAGGTTGATCTTTGCTGGGAAGCAACTGGAGGATGGAAGGACTCTTGCTGACTACAAC 296001 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGT 29190 |||||||| || |||||||||||| | || || || | || || |||| Sbjct 296000 ATTCAGAAAGAGTCTACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGGT 295952 >seq3517 Length=1029689 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || ||||| ||| || |||| || | Sbjct 701809 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 701868 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || || ||||| || | ||| |||||| Sbjct 701869 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 701928 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || || ||||| || |||||||| || ||| | ||| | || |||||||| Sbjct 701929 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 701988 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| || |||||| ||||| | || || |||| || Sbjct 701989 ATTCAGAAGGAATCCACCCTTCACTTGGTGCTTCGTTTGAGAGGTGG 702035 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || ||||| ||| || |||| || | Sbjct 706210 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 706269 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || || ||||| || | ||| |||||| Sbjct 706270 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 706329 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || || ||||| || |||||||| || ||| | ||| | || |||||||| Sbjct 706330 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 706389 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| || |||||| ||||| | || || |||| || Sbjct 706390 ATTCAGAAGGAATCCACCCTTCACTTGGTGCTTCGTTTGAGAGGTGG 706436 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| || || ||||| ||| || ||| || Sbjct 702037 ATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 702096 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || || ||| || || |||||| | || ||| ||| Sbjct 702097 GATACCATAGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAA 702156 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || |||||| | ||| | || || || || Sbjct 702157 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAAC 702216 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||||||||| || ||| ||||||| || Sbjct 702217 ATCCAGAAGGAATCTACCCTGCACTTGGTGTTGCG 702251 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| || || ||||| ||| || ||| || Sbjct 706438 ATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 706497 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || || ||| || || |||||| | || ||| ||| Sbjct 706498 GATACCATAGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAA 706557 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || |||||| | ||| | || || || || Sbjct 706558 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAAC 706617 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||||||||| || ||| ||||||| || Sbjct 706618 ATCCAGAAGGAATCTACCCTGCACTTGGTGTTGCG 706652 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | ||||| ||||| ||||| ||||| ||| || |||| || | Sbjct 705982 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 706041 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | || || ||| || || ||||| | || || || Sbjct 706042 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 706101 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||||||||| |||||||| || ||| || | ||||||||||| Sbjct 706102 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 706161 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || || |||||||| || || || Sbjct 706162 ATCCAAAAGGAATCAACCCTCCA 706184 >seq7180 Length=1421306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || ||||| ||| | |||||||| || || || || ||||| Sbjct 1039146 GATAAGGAAGGTATTCCACCGGATCAGCAACGTCTTATCTTCGCCGGAAAGCAGTTGGAA 1039205 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || ||| | ||||||||||||||||| |||||||| || ||||| ||||| | Sbjct 1039206 GACGGCAGAACCCTTGCCGATTACAATATTCAAAAGGAATCGACGCTTCATCTGGTGCTT 1039265 Query 29175 CGATTACGAGGAGGG 29189 || | || |||||| Sbjct 1039266 CGTCTCCGCGGAGGG 1039280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || |||||||| || || || ||| || | Sbjct 1038825 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACAATCACGCTAGAGGTGGAGTCCTCC 1038884 Query 29022 GAGACGGTGGCCGAT--CTT--AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 || || | |||| | | |||| || | || ||||| ||||| | || || Sbjct 1038885 GACACAAT---CGATAACGTGAAAGCCAAGA-TTCAAGATAAGGAAGGGATTCCTCCGGA 1038940 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| ||| | | ||||| || || |||||||| ||||| || ||| | |||||||| Sbjct 1038941 TCAGCAACGTTTGATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACCCTCGCCGATTA 1039000 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||| ||||| ||||| ||||| || ||||| | || | || |||||| Sbjct 1039001 CAATATCCAGAAAGAATCGACTCTGCATTTGGTGCTTCGTCTCCGCGGAGGG 1039052 >seq21071 Length=2748687 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || |||||||| || ||||| ||| || ||| || Sbjct 2708929 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACCTTGGAGGTGGAGAGTTCA 2708870 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || || ||| ||||| || ||| | ||| ||| || Sbjct 2708869 GATACCATAGACAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 2708810 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || |||||| ||| | || ||||| || Sbjct 2708809 CAGAGGCTTATCTTTGCTGGTAAACAGCTTGAAGATGGACGAACCCTTGCAGATTATAAC 2708750 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || |||||||||||||| || ||| |||| || Sbjct 2708749 ATCCAGAAGGAATCTACCCTGCACTTGGTTTT 2708718 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| ||||| ||||| ||| ||| ||| || | Sbjct 2709157 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTCGAATCCTCG 2709098 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || || || ||| | || |||||| Sbjct 2709097 GACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGATCAG 2709038 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | || ||||| || |||||||| || ||| | ||| | || ||||||||| Sbjct 2709037 CAGAGGTTGATATTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAT 2708978 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| ||||| | ||| |||| | || ||| |||| || Sbjct 2708977 ATTCAGAAGGAGTCTACCTTACACTTGGTTCTTCGTTTAAGAGGTGG 2708931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428162841156350