Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq7180 100 2e-16 seq25741 98.7 8e-16 seq21071 86.0 5e-12 seq3517 82.4 6e-11 >seq7180 Length=1421306 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || ||||| ||| | |||||||| || || || || |||||| Sbjct 1039146 GATAAGGAAGGTATTCCACCGGATCAGCAACGTCTTATCTTCGCCGGAAAGCAGTTGGAA 1039205 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||| | |||||||||||||||||||||||||| || ||||| ||||| | Sbjct 1039206 GACGGCAGAACCCTTGCCGATTACAATATTCAAAAGGAATCGACGCTTCATCTGGTGCTT 1039265 Query 25248 CGATTACGAGGAGGG 25262 || | || |||||| Sbjct 1039266 CGTCTCCGCGGAGGG 1039280 >seq25741 Length=849835 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || |||||||| || || || || ||| || || | | Sbjct 273893 AATGCAAATCTTTGTTAAGACATTGACCGGAAAGACAATCACCCTTGAGGTCGAGAGCTC 273952 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || | ||| || ||| || ||||| ||| | || ||| || Sbjct 273953 TGACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 274012 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| ||||||||||| || || || | |||||| || ||| |||| |||||||| Sbjct 274013 ACAAAGGCTTATCTTTGCAGGAAAGCAGCTAGAAGATGGCAGAACCTTGGCTGATTACAA 274072 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||| || ||||||||||| || ||| ||||| | || | || || ||| Sbjct 274073 TATCCAGAAGGAATCTACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGG 274121 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||| ||| | || ||| |||||||| ||||||||||| || || || | ||| Sbjct 296999 GACAAAGAGGGTATCCCACCAGACCAACAAAGGCTTATCTTTGCAGGAAAGCAGCTAGAA 296940 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| |||| ||||||||||| || ||||||||||| || ||| ||||| | Sbjct 296939 GATGGCAGAACCTTGGCTGATTACAATATCCAGAAGGAATCTACCCTCCACTTGGTGCTC 296880 Query 25248 CGATTACGAGGAGGG 25262 || | || || ||| Sbjct 296879 CGTCTTCGTGGTGGG 296865 >seq21071 Length=2748687 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| ||||| ||||| ||| ||| ||| || | Sbjct 2709157 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTCGAATCCTCG 2709098 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || || || ||| | || |||||| Sbjct 2709097 GACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGATCAG 2709038 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | || ||||| || |||||| | || ||| | ||| | || ||||||||| Sbjct 2709037 CAGAGGTTGATATTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAT 2708978 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| ||||| | ||| |||| | || ||| |||| || Sbjct 2708977 ATTCAGAAGGAGTCTACCTTACACTTGGTTCTTCGTTTAAGAGGTGG 2708931 >seq3517 Length=1029689 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| ||||| || || ||||| ||| || ||| || Sbjct 702037 ATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 702096 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || || ||| || || |||||| | || ||| ||| Sbjct 702097 GATACCATAGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAA 702156 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || ||||| | |||||| | ||| | || || || || Sbjct 702157 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAAC 702216 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || ||||||||||| || ||| ||||||| || Sbjct 702217 ATCCAGAAGGAATCTACCCTGCACTTGGTGTTGCG 702251 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| |||||| | ||||| ||||| ||||| ||||| ||| || |||| || | Sbjct 705982 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 706041 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | || || ||| || || ||||| | || || || Sbjct 706042 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 706101 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||||||||||||||| |||||| | || ||| || | ||||||||||| Sbjct 706102 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 706161 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || ||||||||||| || || || Sbjct 706162 ATCCAAAAGGAATCAACCCTCCA 706184 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| ||||| || || ||||| ||| || ||| || Sbjct 706438 ATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 706497 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || || ||| || || |||||| | || ||| ||| Sbjct 706498 GATACCATAGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAA 706557 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || ||||| | |||||| | ||| | || || || || Sbjct 706558 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAAC 706617 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || ||||||||||| || ||| ||||||| || Sbjct 706618 ATCCAGAAGGAATCTACCCTGCACTTGGTGTTGCG 706652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410630731542380