Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq22486 116 2e-21 seq31939 107 1e-18 seq21530 107 1e-18 seq30922 95.1 8e-15 seq17534 93.3 3e-14 seq21796 91.5 1e-13 seq7180 86.0 4e-12 seq22595 84.2 1e-11 >seq22486 Length=836894 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | || || ||||| ||||||||||||| Sbjct 787458 CCGCCACGGAGGCGGAGGACAAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 787399 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||| || ||||| ||||| ||||||||||| || Sbjct 787398 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGG 787339 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | || || || Sbjct 787338 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACC 787279 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 |||| |||||| ||||| || || || |||||||| ||||||||||||| Sbjct 787278 TCCAACGTGATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCG 787230 >seq31939 Length=7596472 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 357479 CCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 357420 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||| || ||||| ||||| ||||||||||| || Sbjct 357419 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGG 357360 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | || || || Sbjct 357359 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAAGACTCCACC 357300 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || | ||||| || || || || || |||||||| ||||||||||||| Sbjct 357299 TCAAGGGTGATCGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCG 357251 >seq21530 Length=1712192 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | |||||| || ||||| ||||||||||| | || |||| |||| Sbjct 1518509 AGGACGAGGTGAAGAGTACTCTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCGTCC 1518568 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||||||||| || |||||||| ||| | | |||||||| Sbjct 1518569 TCAAGTTGCTTTCCGGCGAAAATGAGACGTTGCTGGTCCGGGGGGATTCCTTCCTTGTCC 1518628 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | ||| || || | |||||||| Sbjct 1518629 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTC 1518688 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGA 34396 || |||||||| || || || |||||||||||| |||| Sbjct 1518689 TTACCGGTGAGGGTCTTGACGAAGATCTGCATCTGTCGA 1518727 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| || ||||| ||||||||||| | Sbjct 1518038 CCACCACGAAGACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCA 1518097 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| || |||| ||||||||| ||| Sbjct 1518098 AGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 1518157 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| |||||| Sbjct 1518158 ATTCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCGACT 1518217 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||||||||| || || || ||||||||||| Sbjct 1518218 TCTAGGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 1518264 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || ||| |||| || | |||||| || ||||| Sbjct 1518301 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 1518360 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || |||||||| ||| | | ||||||||| ||||| ||| | | Sbjct 1518361 GATGAGACGTTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 1518420 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| ||| || || | || ||||| ||||||||||| || || || Sbjct 1518421 ATCGATGGTGTCGGAGCTTTCAACCTCTAGGGTTATGGTCTTGCCGGTGAGTGTCTTAAC 1518480 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 1518481 GAAGATCTGCAT 1518492 >seq30922 Length=1454590 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || || |||| || | ||||| || ||||| Sbjct 136238 TTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGCCCGTCCTCAAGTTGCTTTCCGGCGAA 136179 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || |||||||| ||| | | ||||||||| ||||| ||| | | Sbjct 136178 GATGAGACGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 136119 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | |||||| || | || ||||||||||| |||||||| || || Sbjct 136118 GTCAATGGTGTCAGAGCTTTCGACCTCTAGGGTTATGGTTTTGCCAGTGAGAGTCTTGAC 136059 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 136058 GAAGATCTGCAT 136047 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| || ||||| ||||||||||| | Sbjct 136501 CCACCACGAAGACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCA 136442 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| || |||| ||||||||| ||| Sbjct 136441 AGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 136382 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| ||||| Sbjct 136381 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACT 136322 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||||||||| || || || ||||||||||| Sbjct 136321 TCTAGGGTTATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 136275 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || |||| |||| || | |||||| || ||||| Sbjct 136009 TCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 135950 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| || ||||| || ||| | | |||||||| ||||| ||| | | | Sbjct 135949 ATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 135890 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||| || || | |||||||| || |||||||| || || || Sbjct 135889 TCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACG 135830 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 135829 AAGATCTGCATC 135818 >seq17534 Length=674752 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 416383 CCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 416324 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || || |||| |||| |||||| || ||||| || || |||||||| | || |||| Sbjct 416323 AGGGTGCGCCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGG 416264 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 416263 -ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATTGTGTCCGATGACTCTAC 416205 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || || |||||||| || |||||||| Sbjct 416204 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAATATCTGCAT 416157 >seq21796 Length=372373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | || ||| ||||| | |||| |||||||| ||||||||||| Sbjct 99774 AACCCACCACGAAGACGCAACACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAGTCA 99715 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | || | | || ||||| ||||| || || || || | || ||||||||| Sbjct 99714 GCAAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAATATCAACCTCTGCTGGTCTGGT 99655 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTC-GA-- 34335 || | | ||||||||| || ||||||||| | || |||||| | ||| || Sbjct 99654 GGGATACCCTCCTTGTCCTGGAT-TTTTGCTTTGACAT----TATCGATTGTGTCTGAGC 99600 Query 34336 -TTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || |||| || || || ||||| || | ||| ||||||||||||||||| Sbjct 99599 TTTCAACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATCTGCAT 99545 >seq7180 Length=1421306 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||| || | || ||| || || || ||||| |||| Sbjct 1039279 CCTCCGCGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCA 1039220 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | |||| ||||||||||| || ||||| || || || ||||| || || Sbjct 1039219 AGGGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGA 1039160 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC----GATTC 34338 | | ||||| || ||||| ||||| | |||||| | ||| || || Sbjct 1039159 ATACCTTCCTTATCCTGGATCTTC-GCTTTCAC---GTTATCGATTGTGTCAGAGGACTC 1039104 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || || | ||| || ||||||||||| || |||||||| |||||||||||| ||| Sbjct 1039103 TACCTCTAGCGTAATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCCCTC 1039048 >seq22595 Length=1721694 Score = 84.2 bits (92), Expect = 1e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 762617 CCGCCGCGGAGGCGGAGGACGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 762676 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || ||| |||| |||| |||||| || ||||| || || |||||||||| || |||| Sbjct 762677 AGGGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 762736 Query 34282 CACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 762737 -ATGCCCTCCTTGTC 762750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322941395115200