Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq27061 107 4e-18 seq26036 98.7 2e-15 seq10089 98.7 2e-15 seq13074 95.1 3e-14 seq6459 86.0 1e-11 >seq27061 Length=934220 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 248799 CTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCT 248858 ||| | || ||| || || || |||| |||| |||||||| || |||| || || || Sbjct 849111 CTATGACAGAGACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCTTACCT 849052 Query 248859 CCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGT 248918 | | || || | || ||| | |||||| | ||| |||||||||||| | || ||||| Sbjct 849051 CTTGAAGGTTCAAGGGAAGGTTGTGGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGT 848992 Query 248919 CGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACG 248978 ||||||||||||||||||||||| | || | || ||| | ||| | |||| Sbjct 848991 TGGGATTCACAAGGATGACATAGATTCTGCCATCAAAACATACCACATGATGTCTCAACG 848932 Query 248979 CTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||| | || ||||| | ||||| || ||||| || || || Sbjct 848931 ATGGTTTACTCATGCATCTCCGACACTTTTCAATGCTGGAAC 848890 >seq26036 Length=1795852 Score = 98.7 bits (108), Expect = 2e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| ||| ||| | || || || || || |||| |||| |||||||| Sbjct 176430 CTAGACAGCGAGATAATCTATGACAGGGACTTTGACTATGATTATTTTGGATTCAAAACC 176371 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 || |||| || || ||| | || || | || || | ||||| | ||| |||||| Sbjct 176370 CTTGAGAGGTCTTACCTCTTGAAGGTTCAAGGGCAGGTTTTGGAAAGGCCTCAACACATG 176311 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 |||||| | || ||||| ||||||||||||||||||||||| | || | || ||| Sbjct 176310 TTGATGAGGGTTGCTGTTGGGATTCACAAGGATGACATAGATTCTGCTGTCAAAACTTAC 176251 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | ||| | |||| ||| | || ||||| | ||||| || ||||| || || || Sbjct 176250 CACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACACTTTTCAATGCTGGAAC 176192 >seq10089 Length=680993 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| ||||||||| || |||| || || ||| | || || Sbjct 148796 GACTTTGACTATGATTACTTTGGTTTCAAAACTCTTGAGAGGTCATACCTCTTGAAGGTT 148737 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | |||||| | |||||||||||||||| | || ||||| || ||||| Sbjct 148736 CAAGGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCAT 148677 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 148676 AAGGATGACATTGA 148663 >seq13074 Length=2244089 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || || |||| ||||| ||||||||| || |||| || || |||| || | Sbjct 1144108 AGACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCATACATCCTGAAGGT 1144049 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | | || ||| | |||||| | |||||||||||||||| | || | ||| || ||||| Sbjct 1144048 TCAAGGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGTTGTTGGAATTCA 1143989 Query 248928 CAAGGATGACATAGA 248942 ||||||||||| || Sbjct 1143988 TAAGGATGACATTGA 1143974 >seq6459 Length=330141 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || ||||||||||||||||| || ||||||| |||||||| ||||| ||||| Sbjct 144439 TTCTCGAAGAAGTTGGTCTTTCCCTGCAGCGAAATCAGCTCCATCCAATCGAACGGGTTC 144380 Query 157334 -GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTT 157392 | || ||||||||||| || |||| ||| |||| | || |||||||||| Sbjct 144379 TGAACA-TTGTACACCTTCCCGCACCCAAGCGCCCCCAGCAACCGATCTGCCACAAACTC 144321 Query 157393 GATGTA 157398 ||||| Sbjct 144320 AATGTA 144315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073310059346560