Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq21071 98.7 8e-16 seq3517 98.7 8e-16 seq25741 91.5 1e-13 seq21796 89.7 4e-13 seq7180 89.7 4e-13 >seq21071 Length=2748687 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | ||| || || ||||| ||||| |||||||||||||| Sbjct 2709159 CCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGCA 2709218 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| || | ||||| |||||| |||||||||| || || || || Sbjct 2709219 AGGGTTCGACCATCCTCAAGCTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGG 2709278 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | | || || || | | | ||||| || ||| Sbjct 2709279 ATCCCTTCCTTGTCTTGAATCT-TAGCTTTCACGTTATCGATGGTGTCGGAGGACTCCAC 2709337 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || |||||||| ||||| || || || ||||| Sbjct 2709338 CTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACGAAGATCTGCAT 2709385 >seq3517 Length=1029689 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | || || |||||||| ||||| |||||||| || || Sbjct 701807 CCACCCCTGAGGCGAAGCACGAGATGGAGGGTTGATTCCTTTTGGATGTTGTAATCAGCA 701748 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | |||||| |||||| |||||||||| || || || || Sbjct 701747 AGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGG 701688 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | | |||| | || ||| ||||| || || Sbjct 701687 ATCCCTTCCTTGTCTTGAATCT-TAGCTTTTACGTTGTCAATGGTGTCGGAGGATTCCAC 701629 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||||||||| |||||||| || || ||||| Sbjct 701628 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTTACGAATATCTGCAT 701581 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | || || |||||||| ||||| |||||||| ||||| Sbjct 706208 CCACCCCTGAGGCGAAGCACGAGATGGAGGGTTGATTCCTTTTGGATGTTGTAATCGGCA 706149 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | |||||| |||||| |||||||||| || || || || Sbjct 706148 AGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGG 706089 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | | |||| | || ||| ||||| || || Sbjct 706088 ATCCCTTCCTTGTCTTGAATCT-TAGCTTTTACGTTGTCAATGGTGTCGGAGGATTCCAC 706030 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||||||||| ||||| || || || ||||| Sbjct 706029 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTCACGAATATCTGCAT 705982 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| |||||| || ||||| || ||||||||||| || || | ||| | | ||| Sbjct 702021 AAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATC 701962 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | |||||| || ||| | || || || || ||||| ||| | ||| || || || Sbjct 701961 CTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGGATGCCCTCTTTGTC 701902 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | ||| || | ||| ||||| || || |||| ||||||| | Sbjct 701901 CTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCACCTCAAGGGTGATGGT 701842 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || || ||||| |||||||| Sbjct 701841 CTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 701809 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| |||||| || ||||| || ||||||||||| || || | ||| | | ||| Sbjct 706422 AAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATC 706363 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | |||||| || ||| | || || || || ||||| ||| | ||| || || || Sbjct 706362 CTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGGATGCCCTCTTTGTC 706303 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | ||| || | ||| ||||| || || |||| ||||||| | Sbjct 706302 CTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCACCTCAAGGGTGATGGT 706243 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || || ||||| |||||||| Sbjct 706242 CTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 706210 >seq25741 Length=849835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || || ||||| || |||| ||| | | |||| Sbjct 274105 AGCACCAAGTGGAGGGTAGATTCCTTCTGGATATTGTAATCAGCCAAGGTTCTGCCATCT 274046 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| ||||||| |||||||| || || | || || || || Sbjct 274045 TCTAGCTGCTTTCCTGCAAAGATAAGCCTTTGTTGGTCTGGTGGGATACCCTCTTTGTCC 273986 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | ||| |||||| | |||| |||| |||||| | Sbjct 273985 TGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTCTCGACCTCAAGGGTGATTGTC 273926 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || ||||||||||| || ||||| ||||||||| Sbjct 273925 TTTCCGGTCAATGTCTTAACAAAGATTTGCATT 273893 >seq21796 Length=372373 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||||||||| |||||||| || |||| ||| | |||| Sbjct 99300 AGCACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCCAAGGTTCGGCCATCT 99241 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| ||| | || || || ||||| || || | ||||| || || Sbjct 99240 TCAAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATACCTTCTTTGTCC 99181 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | || ||||| | ||| ||||||| | ||| |||| ||||||| | Sbjct 99180 TGAATCT-TGGCTTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCAAGGGTGATGGT 99122 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | || || ||||| |||||||| Sbjct 99121 CTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 99089 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||||||||| |||||||| || |||| ||| | |||| Sbjct 99072 AGAACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCCAAGGTTCGGCCATCT 99013 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| |||| || || |||||||| || | || || || || Sbjct 99012 TCTAGCTGCTTTCCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATACCCTCTTTGTCC 98953 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | ||| |||||| | ||| |||| |||||| | Sbjct 98952 TGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATTGTC 98893 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || ||||||| || || ||||| ||||||||| Sbjct 98892 TTTCCGGTCAGAGTCTTAACAAAGATTTGCATT 98860 >seq7180 Length=1421306 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| ||||| || ||||| |||||||| ||||| ||||| Sbjct 1039279 CCTCCGCGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCA 1039220 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||||| || || || || ||||||| | ||| |||||| || Sbjct 1039219 AGGGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGA 1039160 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 1039159 ATACCTTCCTTATC 1039146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379190646631650