Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq646 125 6e-24 seq7180 118 9e-22 seq25741 98.7 9e-16 seq3517 95.1 1e-14 seq21796 93.3 4e-14 seq21071 89.7 5e-13 >seq646 Length=2337744 Score = 125 bits (138), Expect = 6e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || || || || || |||||||| || | || || || | || Sbjct 1860158 CATGCAAATCTTCGTCAAAACCCTAACCGGTAAAACGATTACGCTAGAGGTCGAGTCCTC 1860217 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || ||| | || ||||||||||||| | || || ||||| Sbjct 1860218 TGACACCATCGATAACGTGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCACCAGACCA 1860277 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || |||||| | |||||| | || | |||||| || Sbjct 1860278 GCAGCGCTTGATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTCGCCGATTACAA 1860337 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| ||||||||||| ||||||||||| ||| |||| Sbjct 1860338 TATTCAGAAAGAATCGACGCTTCATCTGGTGCTTCGACT 1860376 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || |||||||| || | || || || | Sbjct 1859928 AATATGCAGATCTTCGTCAAAACCCTAACCGGTAAAACGATTACGCTAGAGGTCGAGTCC 1859987 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || ||| | ||| |||||||||||| | || || || Sbjct 1859988 TCCGACACAATCGATAACGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCACCGGAT 1860047 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || ||||| || ||||| | |||||| | ||| | |||||| Sbjct 1860048 CAGCAGCGTTTGATCTTCGCCGGTAAACAACTCGAAGACGGCAGAACTCTCGCCGATTAC 1860107 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||||||||| || || || || || Sbjct 1860108 AATATCCAGAAAGAATCGACGCTCCACCTCGTCCT 1860142 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || ||||| || || | || || || || Sbjct 1860387 ATGCAGATCTTCGTGAAGACGCTCACCGGGAAAACTATTACTCTGGAGGTGGAGAGTTCT 1860446 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||| |||||||| | || || || ||| Sbjct 1860447 GATACGATCGATAACGTGAAGGCGAAGATTCAGGATAAGGAAGGGATTCCACCGGATCAG 1860506 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | |||||| ||| | |||||| || Sbjct 1860507 CAGCGTCTTATCTTCGCTGGGAAGCAGCTCGAAGACGGACGCACTCTCGCCGATTACAAT 1860566 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| || ||||| || ||||| || || ||||| || Sbjct 1860567 ATTCAGAAGGAATCCACGCTTCACCTTGTTCTTAGGCT 1860604 >seq7180 Length=1421306 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || ||||||||||| || | || || || | || Sbjct 1039053 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATTACGCTAGAGGTAGAGTCCTCT 1039112 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| || || ||| |||||||| | || || || ||| Sbjct 1039113 GACACAATCGATAACGTGAAAGCGAAGATCCAGGATAAGGAAGGTATTCCACCGGATCAG 1039172 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || || |||||||||||| | || | |||||| || Sbjct 1039173 CAACGTCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGAACCCTTGCCGATTACAAT 1039232 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||| |||||||| ||||||||||| ||| Sbjct 1039233 ATTCAAAAGGAATCGACGCTTCATCTGGTGCTT 1039265 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || || || || |||||||| ||||| | || || || | || Sbjct 1038824 CATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACAATCACGCTAGAGGTGGAGTCCTC 1038883 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || ||| | || || |||||||| | || || || || Sbjct 1038884 CGACACAATCGATAACGTGAAAGCCAAGATTCAAGATAAGGAAGGGATTCCTCCGGATCA 1038943 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||| | || ||||| || ||||| | |||||| | || | |||||| || Sbjct 1038944 GCAACGTTTGATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACCCTCGCCGATTACAA 1039003 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || |||||||||||||| ||| |||| ||| Sbjct 1039004 TATCCAGAAAGAATCGACTCTGCATTTGGTGCTT 1039037 >seq25741 Length=849835 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| ||||||| ||||| |||||| | || |||||| || Sbjct 275034 ATGCAGATCTTTGTGAAGACTTTGACAGGGAAAACTATCACCTTGGAGGTTGAAAGTTCA 275093 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | |||| |||||||||||| | || || ||||| Sbjct 275094 GACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGTATCCCCCCAGACCAA 275153 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || |||| || | |||| | || || ||| Sbjct 275154 CAGAGGTTGATCTTTGCTGGGAAGCAACTGGAGGATGGAAGGACTCTTGCTGACTACAAC 275213 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| || |||||||| || || Sbjct 275214 ATTCAGAAAGAGTCTACTCTTCACCTTGT 275242 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| ||||||| ||||| |||||| | || |||||| || Sbjct 296180 ATGCAGATCTTTGTGAAGACTTTGACAGGGAAAACTATCACCTTGGAGGTTGAAAGTTCA 296121 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | |||| |||||||||||| | || || ||||| Sbjct 296120 GACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGTATCCCCCCAGACCAA 296061 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || |||| || | |||| | || || ||| Sbjct 296060 CAGAGGTTGATCTTTGCTGGGAAGCAACTGGAGGATGGAAGGACTCTTGCTGACTACAAC 296001 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| || |||||||| || || Sbjct 296000 ATTCAGAAAGAGTCTACTCTTCACCTTGT 295972 >seq3517 Length=1029689 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||| ||| |||| ||||| || |||||| | || || ||| | ||| Sbjct 701581 ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 701640 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||||||||| | || || |||||| Sbjct 701641 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 701700 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| | || || | || | ||||| ||| Sbjct 701701 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCTGATTACAAC 701760 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| ||||| || || ||||| || ||| | || ||||| || Sbjct 701761 ATCCAAAAGGAATCAACCCTCCATCTCGTGCTTCGCCTCAGGGGTGG 701807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || ||| |||| ||||| || |||||| | || || ||| | ||| Sbjct 705982 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 706041 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||||||||| | || || |||||| Sbjct 706042 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 706101 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| | || || | || | |||||| ||| Sbjct 706102 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 706161 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| ||||| || || ||||| || ||| | || ||||| || Sbjct 706162 ATCCAAAAGGAATCAACCCTCCATCTCGTGCTTCGCCTCAGGGGTGG 706208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || |||||| |||| || ||||| || || | || |||||| || Sbjct 706665 CATGCAAATCTTTGTTAAGACTTTGACTGGAAAAACCATAACTTTGGAGGTTGAAAGCTC 706724 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | || || || ||| || |||||||||||| | || || |||| Sbjct 706725 TGACACCATCGATAATGTGAAGGCAAAGA-TACAGGACAAGGAAGGTATTCCACCAGACC 706783 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || || || || ||| ||||||| || || ||||||| Sbjct 706784 AGCAGAGGCTTATTTTTGCAGGGAAGCAGCTGGAAGATGGGCGTACCCTGGCTGATTATA 706843 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | || || || ||||| ||||| ||| |||| Sbjct 706844 ATATCCAGAAGGAATCCACTCTGCATTTGGT 706874 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||||||||| || || || ||| | || || ||| || Sbjct 706894 ATGCAAATATTTGTGAAGACTCTGACAGGGAAGACCATAACCTTGGAGGTGGAAAGCTCT 706953 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || ||| || || || ||||||||| || | || || || || Sbjct 706954 GATACCATTGATAATGTGAAAGCAAAG-ATTCAGGACAAGGAGGGTATTCCACCAGATCA 707012 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || ||||| || || |||||||| | || || ||||| || Sbjct 707013 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCGGATTACAA 707072 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| || || ||||| || || Sbjct 707073 TATTCAGAAGGAATCCACCCTGCATCTTGTCCT 707105 >seq21796 Length=372373 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| || || || || |||||| | || || || || Sbjct 99089 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 99148 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | || |||||| ||||| | || || ||||| Sbjct 99149 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAAGAAGGTATCCCACCAGACCAA 99208 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||||||| | ||||| || || ||||| ||| Sbjct 99209 CAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACAAC 99268 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| || || || |||| || | ||| | || |||| Sbjct 99269 ATCCAAAAAGAATCTACCCTCCACTTGGTGCTCCGTCTGCGCGGTGGTA 99317 >seq21071 Length=2748687 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || ||| |||| || || || |||||| | || || || | ||| Sbjct 2709385 ATGCAGATCTTCGTGAAAACTTTGACCGGTAAGACCATCACCCTTGAGGTGGAGTCCTCC 2709326 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | || ||||||||||| | || || |||||| Sbjct 2709325 GACACCATCGATAACGTGAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 2709266 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || |||||| | || || | || | ||| || ||| Sbjct 2709265 CAGAGACTTATCTTTGCGGGTAAACAGCTTGAGGATGGTCGAACCCTTGCCGACTACAAC 2709206 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| ||||| ||||| || || || ||| | || ||||| || Sbjct 2709205 ATCCAAAAGGAATCCACTCTCCACCTCGTGCTTCGCCTCAGGGGTGG 2709159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||||||||| || || || ||| | || || ||| || Sbjct 2708473 ATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCT 2708414 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| | || |||||||||||| | || || || ||| Sbjct 2708413 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCTCCAGATCAG 2708354 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || || |||||||| | || || ||||| || Sbjct 2708353 CAGAGGCTCATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGATTACAAT 2708294 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || ||||| ||| | ||||| || ||| Sbjct 2708293 ATTCAGAAGGAATCCACTTTGCATCTTGTCCTT 2708261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445581574106400