Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq20448 107 3e-18 seq26036 102 1e-16 seq6459 96.9 5e-15 seq27061 93.3 6e-14 >seq20448 Length=1126904 Score = 107 bits (118), Expect = 3e-18 Identities = 230/341 (67%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| ||||| |||||||| || ||||| |||| || | ||||||||| || ||||| Sbjct 920639 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 920580 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 36275 || ||||||| |||||||| || ||||||||||| | |||| || ||| || |||| Sbjct 920579 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGA 920521 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 36335 | ||||| || || || || || | || | ||| | | | | ||| | Sbjct 920520 ATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGAGGCATCGA 920461 Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 |||| | ||||| | ||| || || | | || || || || | ||| || || Sbjct 920460 TCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAA 920401 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 36455 | ||| |||||||| | ||||| | || || || | | || || ||||||| Sbjct 920400 ACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTT 920341 Query 36456 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496 | || || || ||||| ||||| ||||| || ||||||||| Sbjct 920340 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 920300 >seq26036 Length=1795852 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265 || |||| ||| |||||||| | || | || || | ||| | || | |||||| || Sbjct 175813 CCTTTTGCCTCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGG 175872 Query 66266 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATT 66325 || ||| ||||||||||| ||||| ||||| ||||| || || | |||||||| | Sbjct 175873 AACAATGCCATTGGATGTCCCATTTGTCCCACGAATATAACTACCTGTAGCACGAATGTC 175932 Query 66326 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 66385 | ||| || | ||| ||||| || || ||| ||| | || || || || || Sbjct 175933 ATGAATAGAGACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGT 175992 Query 66386 ATCATAGATGCCCTCTATACTATCATCCATCATG 66419 ||||| || ||||||||||||||||| ||||| Sbjct 175993 TTCATATATCCCCTCTATACTATCATCTTTCATG 176026 >seq6459 Length=330141 Score = 96.9 bits (106), Expect = 5e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 || ||| ||||||||||||||||| || ||||| | | ||| | |||||| || || || Sbjct 144173 CAGACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGT 144114 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 ||| || ||||| || || || ||||| ||||| || || | |||| || |||||| | Sbjct 144113 GAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAG-CGCAGAAGCTTCCAGAGA 144055 Query 36273 AGAAAATTCCTT 36284 ||||||| |||| Sbjct 144054 AGAAAATACCTT 144043 >seq27061 Length=934220 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| |||||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 848516 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCC 848575 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 |||||| || ||||| ||||| ||||| || || | |||||||| | | ||| || Sbjct 848576 ATTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGA 848635 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || ||| ||| | || || || || || || || || Sbjct 848636 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATAT 848695 Query 66395 GCCCTCTATACTATCATCCATCAT 66418 ||||||||||||||||| |||| Sbjct 848696 CCCCTCTATACTATCATCTTTCAT 848719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657899905102800