Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq20448 118 2e-21 seq26036 96.9 5e-15 seq27061 89.7 7e-13 seq6459 87.8 3e-12 >seq20448 Length=1126904 Score = 118 bits (130), Expect = 2e-21 Identities = 374/577 (65%), Gaps = 2/577 (0%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| ||||| |||||||| || ||||| |||| || ||||||||||| || ||||| Sbjct 920639 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 920580 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 || ||||||| |||||||| || ||||||||||| | |||| || || || |||| Sbjct 920579 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGA 920521 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTA 50137 | ||||| || || || || || || || | ||| | | | | ||| | Sbjct 920520 ATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGAGGCATCGA 920461 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 |||| | ||||| | ||| || || | | || || || || | |||||| || Sbjct 920460 TCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAA 920401 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 | ||| |||||||| | ||||| | || || || | | || || ||||||| Sbjct 920400 ACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTT 920341 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | || || || ||||| ||||| || || || ||||||||| | ||||| | | | Sbjct 920340 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAAGCGCGGGCCTCCGGGAGTT 920281 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 | | |||| | || || | || | ||||| || || ||||| ||| || | Sbjct 920280 GGATTTCTTTGGTGAAGCGGCCGGCGAGGTTTTCTAGGACGATGCCGTCGGAGGCGGCGA 920221 Query 50378 AAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCAT 50437 | || || | || || | || || || ||| | | || | ||| | Sbjct 920220 AGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGCTGAGGGTGGCCCAGTGGC 920161 Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 || || | || | || || || ||| | ||||| || || ||||| || || |||| Sbjct 920160 GGAGGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCTTTCTTAT 920101 Query 50498 ACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 |||| | |||||| | | | |||||||||||||| || Sbjct 920100 ACATTTCCCAGATTTGAGGGTATTGGATTGGGAACAT 920064 >seq26036 Length=1795852 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 |||| ||| |||||||| | || | || || | ||| | || | |||||| |||| Sbjct 175816 TTTGCCTCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGGAAC 175875 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 ||| ||||||||||| ||||| ||||| ||||| || || | |||||||| | | Sbjct 175876 AATGCCATTGGATGTCCCATTTGTCCCACGAATATAACTACCTGTAGCACGAATGTCATG 175935 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 ||| || | ||| ||||| || || ||| ||| | || || || || || || Sbjct 175936 AATAGAGACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTC 175995 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATG 80298 ||| || |||||||| |||||||| ||||| Sbjct 175996 ATATATCCCCTCTATACTATCATCTTTCATG 176026 >seq27061 Length=934220 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| |||||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 848516 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCC 848575 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| || ||||| ||||| ||||| || || | |||||||| | | ||| || Sbjct 848576 ATTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGA 848635 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || || || || || || || || Sbjct 848636 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATAT 848695 Query 80274 GCCCTCTATGCTATCATCAATCAT 80297 |||||||| |||||||| |||| Sbjct 848696 CCCCTCTATACTATCATCTTTCAT 848719 >seq6459 Length=330141 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || ||| |||||||||||||| || || ||||| | | ||| |||||||| || || || Sbjct 144173 CAGACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGT 144114 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074 ||| || ||||| || || || ||||| ||||| || || | |||| || ||||| | Sbjct 144113 GAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAG-CGCAGAAGCTTCCAGAGA 144055 Query 50075 AGAAGATTCCTT 50086 |||| || |||| Sbjct 144054 AGAAAATACCTT 144043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717970987798800