Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq7180 95.1 9e-15 seq646 89.7 4e-13 seq21071 87.8 1e-12 >seq7180 Length=1421306 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | ||||| ||| | || |||||||| | ||||||||||| Sbjct 1039279 CCTCCGCGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCA 1039220 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| ||||| || || ||||| || || | || || ||||| | || Sbjct 1039219 AGGGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGA 1039160 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | |||| || | | | |||||| | ||| || Sbjct 1039159 ATACCTTCCTTATCCTGGATCTTCGCTTTCACGTTATCGATTGTGTCAGAGGACTCTACC 1039100 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||| || ||||| |||||||| |||||||| || || ||||| Sbjct 1039099 TCTAGCGTAATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 1039053 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | ||||||||| | ||| || || || | ||||||||||| Sbjct 1039051 CCTCCGCGGAGACGAAGCACCAAATGCAGAGTCGATTCTTTCTGGATATTGTAATCGGCG 1038992 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| || | |||||| ||||| || ||||| || || ||||| | || Sbjct 1038991 AGGGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGATCCGGAGGA 1038932 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| |||| || | | | ||||||| | ||| || Sbjct 1038931 ATCCCTTCCTTATCTTGAATCTTGGCTTTCACGTTATCGATTGTGTCGGAGGACTCCACC 1038872 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||| || ||||| || ||||| ||||| || || |||||||| Sbjct 1038871 TCTAGCGTGATTGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 1038825 >seq646 Length=2337744 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | ||||||||||| | || | |||| || | |||||| ||||| || Sbjct 1860121 TCTTTCTGGATATTGTAATCGGCGAGAGTTCTGCCGTCTTCGAGTTGTTTACCGGCGAAG 1860062 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| ||||| ||||| | || | ||||| || || ||| |||| || | Sbjct 1860061 ATCAAACGCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTCACGTTA 1860002 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||||| | |||||| |||| ||| || ||||| |||||||| ||||| || Sbjct 1860001 TCGATTGTGTCGGAGGACTCGACCTCTAGCGTAATCGTTTTACCGGTTAGGGTTTTGACG 1859942 Query 43099 AAAATTTGCATTTT 43112 || || ||||| || Sbjct 1859941 AAGATCTGCATATT 1859928 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| | ||||| ||| | || || || || | ||||||||||| Sbjct 1860385 CCTCCGCGGAGTCGAAGCACCAGATGAAGCGTCGATTCTTTCTGAATATTGTAATCGGCG 1860326 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| || | ||||| ||||| || ||||| ||||| || || | || Sbjct 1860325 AGGGTTCTGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGA 1860266 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | | | ||||| | |||||| Sbjct 1860265 ATGCCTTCCTTGTCCTGGATCTTAGCTTTCACGTTATCGATGGTGTCAGAGGACTCGACC 1860206 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||| || ||||| |||||||| ||||| || || |||||||| Sbjct 1860205 TCTAGCGTAATCGTTTTACCGGTTAGGGTTTTGACGAAGATTTGCAT 1860159 >seq21071 Length=2748687 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | || |||||| ||| ||||| || || |||||||| || || |||||| Sbjct 2704290 TCCTTTTGAATATCGTAATCTTCCAAGGTACGCTCATCTTCCAATTGCTTCCCAGCAAAA 2704349 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 || | | ||| ||||| | || | || || ||||| |||| || |||| || | Sbjct 2704350 ATAAGCCTCTGCTGATCCGGTGGAATGCCCTCCTTTTC-CTGAATCTTAGCTTTCACATT 2704408 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||| || | | || || |||| ||||| || ||||| || | || || || Sbjct 2704409 TTCAATTGTATCAGAACCTTCAACCTCTAAAGTTATGGTCTTTCCCGTCAAGGTCTTGAC 2704468 Query 43098 AAAAATTTGCAT 43109 |||||||||||| Sbjct 2704469 AAAAATTTGCAT 2704480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381215427763860