Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq25741 102 6e-17 seq3517 98.7 7e-16 seq21796 96.9 3e-15 seq7180 93.3 3e-14 seq32646 84.2 2e-11 >seq25741 Length=849835 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||||| || ||||| ||||||||||| || | | | || || Sbjct 273874 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTACGTCCATCCTCA 273815 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || |||||||| | || | |||||| ||||| ||| || ||||| ||||| | Sbjct 273814 AGCTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGA 273755 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||||| | ||||||||||| | | || || || | ||| || || ||| Sbjct 273754 ATCTTGGACTTTACATTATCTATGGTATCTGAACTCTCCACCTCAAGGGTGATTGTCTTA 273695 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || |||||||| Sbjct 273694 CCAGTGAGTGTCTTAACGAAGATTTGCAT 273666 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| || ||||| ||||||||||| || | | | || || Sbjct 297112 ACCAAGTGTAGAGTGGACTCCTTTTGAATGTTGTAATCAGCAAGTGTACGTCCATCCTCA 297171 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || |||||||| | || | |||||| ||||| ||| || ||||| ||||| | Sbjct 297172 AGCTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGA 297231 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||||| | ||||||||||| | | || || || | ||| || || ||| Sbjct 297232 ATCTTGGACTTTACATTATCTATGGTATCTGAACTCTCCACCTCAAGGGTGATTGTCTTA 297291 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 297292 CCAGTGAGTGTCTTAACAAAGATTTGCAT 297320 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || |||||||||||| || | | | || || | || Sbjct 296662 TGGAGGGTGGACTCTTTCTGAATGTTGTAATCGGCAAGGGTACGGCCATCCTCAAGCTGC 296721 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| | ||||||||| ||| || || |||||||| ||| || Sbjct 296722 TTTCCAGCAAAGATCAGCCTCTGTTGGTCGGGTGGGATACCCTCTTTGTCTTGAATCTTA 296781 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | | || || || | |||||| || || || ||| Sbjct 296782 GCCTTGACATTGTCAATGGTGTCAGAACTCTCCACCTCAAGGGTAATTGTCTTTCCAGTC 296841 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| |||||||| Sbjct 296842 AAGGTCTTGACAAAGATTTGCAT 296864 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || ||||| || |||||||||||| || | | | || || | || Sbjct 274324 TGGAGGGTCGACTCTTTCTGAATGTTGTAATCGGCAAGGGTACGGCCATCCTCAAGCTGC 274265 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| | ||||||||| ||| || || |||||||| ||| || Sbjct 274264 TTTCCAGCAAAGATCAGCCTCTGTTGGTCGGGTGGGATACCCTCTTTGTCTTGAATCTTA 274205 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | | || || || | |||||| || || || ||| Sbjct 274204 GCCTTGACATTGTCAATGGTGTCAGAACTCTCCACCTCAAGGGTAATTGTCTTTCCAGTC 274145 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| |||||||| Sbjct 274144 AAGGTCTTGACAAAGATTTGCAT 274122 >seq3517 Length=1029689 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATT 15218 ||| |||||||| || || || || |||||||| || || | | | ||||| |||| Sbjct 707097 ATGCAGGGTGGATTCCTTCTGAATATTGTAATCCGCCAAGG-TACGACCATCTTCCAATT 707039 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-T 15277 | || ||||| | || | | || || || |||||| || || ||||| ||| | Sbjct 707038 GCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCT 706979 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||||| || ||| | || |||||||| |||| || || ||||| ||||| || ||| Sbjct 706978 TTGCT-TTCACATTATCAATGGTATCAGAGCTTTCCACCTCCAAGGTTATGGTCTTCCCT 706920 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| || ||||| ||||||||| Sbjct 706919 GTCAGAGTCTTCACAAATATTTGCATA 706893 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || ||||| || || || || ||||| || || || |||| | ||| Sbjct 702248 AACACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTTCCATCT 702189 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | || | | |||||||| ||| || ||||| ||||| Sbjct 702188 TCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATACCTTCCTTGTCC 702129 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || ||| | ||||||||||| | | || || || ||||| ||||| Sbjct 702128 TGAATCTTAGCT-TTCACATTGTCTATGGTATCTGAACTCTCCACCTCCAAGGTTATGGT 702070 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| |||||| || ||||| |||||| Sbjct 702069 CTTTCCGGTCAAAGTTTTAACGAAAATCTGCATA 702036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || ||||| || || || || ||||| || || || |||| | ||| Sbjct 706649 AACACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTTCCATCT 706590 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | || | | |||||||| ||| || ||||| ||||| Sbjct 706589 TCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATACCTTCCTTGTCC 706530 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || ||| | ||||||||||| | | || || || ||||| ||||| Sbjct 706529 TGAATCTTAGCT-TTCACATTGTCTATGGTATCTGAACTCTCCACCTCCAAGGTTATGGT 706471 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| |||||| || ||||| |||||| Sbjct 706470 CTTTCCGGTCAAAGTTTTAACGAAAATCTGCATA 706437 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || || ||||||||||| || || || ||||||||||| Sbjct 702035 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 701976 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | || || | |||||| || || | |||| | || || || || Sbjct 701975 AGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGG 701916 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| || ||| ||| ||| | || ||||| || ||| || Sbjct 701915 ATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCACC 701856 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || |||| ||| || ||||| |||||||| Sbjct 701855 TCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 701809 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || || ||||||||||| || || || ||||||||||| Sbjct 706436 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 706377 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | || || | |||||| || || | |||| | || || || || Sbjct 706376 AGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGG 706317 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| || ||| ||| ||| | || ||||| || ||| || Sbjct 706316 ATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCACC 706257 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || |||| ||| || ||||| |||||||| Sbjct 706256 TCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 706210 >seq21796 Length=372373 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || ||||| || ||||| ||||| ||||| || | | | || || Sbjct 98614 AACCAAGTGGAGAGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGTCCATCCTC 98555 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || |||||||| | || | |||||| || || ||| || ||||| ||||| Sbjct 98554 AAGCTGCTTGCCAGCAAAAATGAGACGTTGCTGATCTGGTGGGATCCCTTCCTTGTCTTG 98495 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||||||| | ||||||||||| | | || || || | || ||||| || Sbjct 98494 AATTTTGGCCTTTACATTGTCTATGGTATCTGAACTCTCGACTTCGAGAGTGATGGTCTT 98435 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 ||| || || || || || || |||||||| | | ||| Sbjct 98434 ACCAGTGAGGGTCTTAACGAAGATTTGCATCTATAAAA 98397 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTC 15213 || || || ||||| || |||||||| ||||||||||| || || ||| | ||||| Sbjct 99297 ACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCCAAGG-TTCGGCCATCTTC 99239 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||||||||| | || | | |||||||| ||| || ||||||||||| Sbjct 99238 AAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATACCTTCTTTGTCCTG 99179 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| || ||| | || || || || | || || || | ||| ||||| || Sbjct 99178 AATCTTGGCTTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTT 99119 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| |||||||| Sbjct 99118 TCCAGTGAGAGTCTTGACAAAGATTTGCAT 99089 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTT 15212 ||| || || ||||| || |||||||| ||||||||||| || || ||| | |||| Sbjct 99070 AACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCCAAG-GTTCGGCCATCTT 99012 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 ||| || || ||||| | || | | ||||| || ||| || || |||||||| Sbjct 99011 CTAGCTGCTTTCCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATACCCTCTTTGTCCT 98952 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| ||| ||| ||| | || ||||| || | || || || | ||| || || | Sbjct 98951 GAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATTGTCT 98892 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || |||||||| || ||||| |||||||| Sbjct 98891 TTCCGGTCAGAGTCTTAACAAAGATTTGCAT 98861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| |||||||| || || | | | ||||| | || Sbjct 99519 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTACGTCCATCTTCAAGCTGC 99460 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | ||||| | ||| ||||| ||||| || || ||||| || ||| Sbjct 99459 TTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTT 99400 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || || || || | ||||| || || |||||||| || || || Sbjct 99399 GC-CTTCACATTGTCAATTGTGTCAGAGCTCTCTACCTCCAAAGTAATGGTCTTCCCAGT 99341 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||||||| Sbjct 99340 AAGGGTCTTCACAAAGATTTGCATA 99316 >seq7180 Length=1421306 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || ||||| || || ||||||||| || |||| ||||||| Sbjct 1039033 ACCAAATGCAGAGTCGATTCTTTCTGGATATTGTAATCGGCGAGGGTTCTGCCGTCTTCG 1038974 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || ||| | ||||||||||| || || ||||| ||||| || || | Sbjct 1038973 AGTTGTTTTCCGGCGAAGATCAAACGTTGCTGATCCGGAGGAATCCCTTCCTTATCTTGA 1038914 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || || | || || || ||| || || |||| || || ||||| Sbjct 1038913 ATCTTGGCTTTCACGTTATCGATTGTGTCGGAGGACTCCACCTCTAGCGTGATTGTTTTG 1038854 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||||||| Sbjct 1038853 CCAGTTAGGGTTTTGACGAAGATTTGCAT 1038825 >seq32646 Length=539585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATT 15218 ||| | |||||| || || || || |||||||| || || | | | |||||||||| Sbjct 528846 ATGCATGGTGGATTCCTTCTGAATATTGTAATCTGCCAAGG-TACGACCATCTTCTAATT 528904 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-T 15277 | | ||||| | || | | ||| || || || || || || ||||| ||| | Sbjct 528905 GCCTCCCAGCAAAAATGAGCCTTTGCTGATCTGGAGGGATACCCTCCTTGTCCTGAATCT 528964 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 | ||| || ||| | || || ||||| |||| || || ||||||||||| || ||| Sbjct 528965 TAGCT-TTCACATTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATGGTCTTCCCT 529023 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| || ||||| ||||||||| Sbjct 529024 GTCAGAGTCTTCACAAATATTTGCATA 529050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362032785662970