Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3517 102 7e-17 seq21071 96.9 3e-15 seq4338 82.4 6e-11 seq646 82.4 6e-11 >seq3517 Length=1029689 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||||| ||| | || || ||||| ||||| |||||||| || Sbjct 702035 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 701976 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| || |||||||| ||| |||| || ||||||||||| ||| Sbjct 701975 AGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGG 701916 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | |||||||||||| || || || || | | | || || | ||| ||| Sbjct 701915 ATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTC-CGAGGATTCCAC 701857 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || ||||| |||||||| |||||||| Sbjct 701856 CTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 701809 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||||| ||| | || || ||||| ||||| |||||||| || Sbjct 706436 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 706377 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| || |||||||| ||| |||| || ||||||||||| ||| Sbjct 706376 AGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGG 706317 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | |||||||||||| || || || || | | | || || | ||| ||| Sbjct 706316 ATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTC-CGAGGATTCCAC 706258 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || ||||| |||||||| |||||||| Sbjct 706257 CTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 706210 >seq21071 Length=2748687 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| || ||||||||||| |||||||||||||| || | ||| | | ||||| Sbjct 2708949 ACCAAGTGTAAGGTAGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCTTCCATCCTCA 2709008 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || |||||||| ||| | || | ||||||||||| || | ||||| ||||| Sbjct 2709009 AGTTGTTTACCAGCAAATATCAACCTCTGCTGATCTGGAGGGATACCCTCCTTGTCCTGG 2709068 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTT 19011 || || || || | | | || || | ||| | || |||| ||| ||||| || Sbjct 2709069 ATCTTGGCCTTGACATTATCAATGGTGTC-CGAGGATTCGACCTCGAGGGTGATGGTCTT 2709127 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| |||||||| |||||||| Sbjct 2709128 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 2709157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| ||||| ||||| ||||| || || || ||||| || Sbjct 2708703 CCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCTGCA 2708762 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || || ||||||||||| ||| | ||||| |||||||| || ||| Sbjct 2708763 AGGGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGG 2708822 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || ||| || ||| || | | | | ||||| | |||| Sbjct 2708823 ATACCCTCCTTATCTTGAATCTTGGCTTTCACATTGTCTATGGTATCTGAACTCTCCACC 2708882 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || ||||| ||||| ||||| ||||| Sbjct 2708883 TCCAAGGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 2708929 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || || |||||||| || ||||| || || | ||| | ||||| Sbjct 2709176 CACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTTCGACCATCCTC 2709235 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||||||||||||| | |||||||||||||| || || | || || ||||| Sbjct 2709236 AAGCTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTG 2709295 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | ||| || ||| | |||| || | ||| ||||| || Sbjct 2709296 AATCTTAGCTTTCACGTTATCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTT 2709355 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || |||||||| || || || ||||| Sbjct 2709356 ACCGGTCAAAGTTTTCACGAAGATCTGCAT 2709385 >seq4338 Length=242114 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| | || ||||||||||||| |||||| |||| || | || |||| || Sbjct 51942 TGCAAGATGGATTCCTTTTGAATATCGTAATCTGCCAAGGTACGACCATCTTCCAATTGC 52001 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||| || |||| |||||| || | ||||| ||||| ||| || Sbjct 52002 TTCCCAGCAAAAATGAGCCTCTACTGATCTGGAGGGATACCCTCCTTGTCCTGAATCTTA 52061 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | | |||||| | ||| || | ||||||||| || ||| || Sbjct 52062 GCTTTCACATTGTCAATAGTATCACAGCTTTCCACCTCCAAGGTAATGGTCTTCCCTATT 52121 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | ||| || ||||| |||||||| Sbjct 52122 AGAGTCTTCACAAATATTTGCAT 52144 >seq646 Length=2337744 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| | ||| || || || || ||||||||||| || | ||| || |||| || || || Sbjct 1860134 GTGGAGCGTCGATTCTTTCTGGATATTGTAATCGGCGAGAGTTCTGCCGTCTTCGAGTTG 1860075 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 |||||| || | || | | |||||||||| || | ||| || ||||| ||||| Sbjct 1860074 TTTACCGGCGAAGATCAAACGCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGATTTT 1860015 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | ||| || ||| | ||| || | ||||| |||||||| || Sbjct 1860014 AGCTTTCACGTTATCGATTGTGTCGGAGGACTCGACCTCTAGCGTAATCGTTTTACCGGT 1859955 Query 19018 TAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || |||||||| || || ||||| || || Sbjct 1859954 TAGGGTTTTGACGAAGATCTGCATATTGAA 1859925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414405205058980