Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq25741 86.0 4e-12 seq21796 86.0 4e-12 seq21071 84.2 2e-11 >seq25741 Length=849835 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| ||||| ||| ||| |||||||| || ||||| | | ||| |||| || Sbjct 297111 CACCAAGTGTAGAGTGGACTCCTTTTGAATGTTGTAATCAGCAAGTGTACGTCCATCCTC 297170 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || || ||||| || | ||||||||||| | || | ||||| || ||| Sbjct 297171 AAGCTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTG 297230 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || || || || | | ||||||| |||||| || | || ||||| || Sbjct 297231 AATCTTGGACTTTACATTATCTATGGTATCTGAACTCTCCACCTCAAGGGTGATTGTCTT 297290 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || | ||||| ||||| |||||||| Sbjct 297291 ACCAGTGAGTGTCTTAACAAAGATTTGCAT 297320 >seq21796 Length=372373 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| || || ||||||||||||| |||||||| | || | ||| || | Sbjct 99701 CATCCTCCAATTGCTTCCCAGCAAATATCAACCTCTGCTGGTCTGGTGGGATACCCTCCT 99642 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | || |||||| |||||| || | | || |||| || || || | |||| Sbjct 99641 TGTCCTGGATTTTTGCTTTGACATTATCGATTGTGTCTGAGCTTTCAACTTCCAAGGTAA 99582 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || || |||||||||||||| || ||||| Sbjct 99581 TAGTCTTGCCTGTCAAAGTCTTCACAAAGATCTGCAT 99545 >seq21071 Length=2748687 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || || |||||||| ||||| || ||| |||| |||||||| || || ||||| Sbjct 2708283 TCCTTCTGAATATTGTAATCTGCCAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAA 2708342 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || ||||| || |||| | |||||| || || ||| || ||| || | Sbjct 2708343 ATGAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATCTTAGCTTTCACATTG 2708402 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| |||||| | ||||| || | ||||| || || || || | |||||||||| Sbjct 2708403 TCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACA 2708462 Query 44111 AATATTTGCAT 44121 ||||| ||||| Sbjct 2708463 AATATCTGCAT 2708473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| | | || ||||||||||| || ||| ||| || || ||||||||||| Sbjct 2708474 ACCTCCACGAAGCCTCAACACCAAATGCAGAGTGGACTCCTTCTGGATATTATAATCAGC 2708533 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| |||| || || || ||||| || | || |||||||| | || Sbjct 2708534 AAGAGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGG 2708593 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| || || ||| || || || | | ||||| | || || Sbjct 2708594 AATCCCCTCTTTGTCCTGTATCTTTGCCTTCACGTTATCGATGGTATCAGAACTTTCAAC 2708653 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || |||||||| ||||| |||||||| ||||| ||||||||| Sbjct 2708654 TTCTAAAGTTATTGTTTTTCCGGTCAAAGTCTTAACAAAGATTTGCATG 2708702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354634177829160