Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq21796 104 2e-17 seq3517 98.7 8e-16 seq25741 95.1 1e-14 seq21071 89.7 4e-13 seq14541 82.4 6e-11 seq117 82.4 6e-11 >seq21796 Length=372373 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || |||||||||||||| ||||||||||| ||| ||| |||||| Sbjct 99298 CACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCCAAGGTTCGGCCATCTTC 99239 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | |||||||| ||| |||| ||||||||||| || || | ||||||||||| Sbjct 99238 AAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATACCTTCTTTGTCCTG 99179 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 ||| || ||| || | | ||| || || || | ||| || | ||| ||||| | Sbjct 99178 AATCTTGGCTTTGACATTGTCAATAGTGTC-AGAGCTCTCCACCTCAAGGGTGATGGTCT 99120 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || | || |||||||| |||||||| Sbjct 99119 TTCCAGTGAGAGTCTTGACAAAGATTTGCAT 99089 >seq3517 Length=1029689 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || ||||||||| || || |||||||| || || ||||| || || | Sbjct 702263 CCACCACGAAGCCGCAACACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAGTCAGCA 702204 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | ||||| || ||| | |||||||||||||| || || Sbjct 702203 AGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGG 702144 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| ||| || |||||| | | | | | ||| | ||| Sbjct 702143 ATACCTTCCTTGTCCTGAATCTTAGCTTTCACATTGTCTATGGTATCTGAACTCTCCACC 702084 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || |||||||| ||||| || ||||| ||||| Sbjct 702083 TCCAAGGTTATGGTCTTTCCGGTCAAAGTTTTAACGAAAATCTGCAT 702037 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || ||||||||| || || |||||||| || || ||||| || || | Sbjct 706664 CCACCACGAAGCCGCAACACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAGTCAGCA 706605 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | ||||| || ||| | |||||||||||||| || || Sbjct 706604 AGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGG 706545 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| ||| || |||||| | | | | | ||| | ||| Sbjct 706544 ATACCTTCCTTGTCCTGAATCTTAGCTTTCACATTGTCTATGGTATCTGAACTCTCCACC 706485 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || |||||||| ||||| || ||||| ||||| Sbjct 706484 TCCAAGGTTATGGTCTTTCCGGTCAAAGTTTTAACGAAAATCTGCAT 706438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| | ||| || || ||||| ||||| |||||||||||| | | || | ||| || Sbjct 706191 CACGAGATGGAGGGTTGATTCCTTTTGGATGTTGTAATCGGCAAGGGTGCGACCATCCTC 706132 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | |||||| |||||| | ||||| ||||| || || || | ||||| ||||| Sbjct 706131 AAGTTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTG 706072 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || ||| || | | ||| | ||| | |||| || | ||| ||||| || Sbjct 706071 AATCTTAGCTTTTACGTTGTCAATGGTGTCGGAGGATTCCACCTCAAGGGTGATGGTCTT 706012 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||||| ||||| || || || ||||| Sbjct 706011 GCCGGTCAAAGTTTTCACGAATATCTGCAT 705982 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || || ||||| || || || |||||||| ||| || | |||||||||||| Sbjct 707097 ATGCAGGGTGGATTCCTTCTGAATATTGTAATCCGCCAAGGTACGACCATCTTCCAATTG 707038 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 || || ||| ||||||||||||| ||||| || | || || ||||| ||| || Sbjct 707037 CTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTT 706978 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 | |||||| | ||| | ||| |||| |||| ||| ||||| || || || Sbjct 706977 TGCTTTCACATTATCAATGGTATCAGAGCTTTCCACCTCCAAGGTTATGGTCTTCCCTGT 706918 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 || || || ||||| |||||||| Sbjct 706917 CAGAGTCTTCACAAATATTTGCAT 706894 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| | ||| || || ||||| ||||| ||||||||||| | | || | ||| || Sbjct 701790 CACGAGATGGAGGGTTGATTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGACCATCCTC 701731 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | |||||| |||||| | ||||| ||||| || || || | ||||| ||||| Sbjct 701730 AAGTTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTG 701671 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || ||| || | | ||| | ||| | |||| || | ||| ||||| || Sbjct 701670 AATCTTAGCTTTTACGTTGTCAATGGTGTCGGAGGATTCCACCTCAAGGGTGATGGTCTT 701611 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||||| ||||| || || || ||||| Sbjct 701610 GCCGGTCAAAGTTTTTACGAATATCTGCAT 701581 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 || ||||| || || || |||||||| ||| || | |||||||| ||| || || Sbjct 702461 GTGGATTCCTTCTGAATATTGTAATCTGCCAAGGTACGACCATCTTCCAGTTGCTTCCCA 702402 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 ||| ||||||||||||| ||||| || | ||| || ||||| ||| ||| ||| Sbjct 702401 GCAAAAATAAGCCTCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTC 702342 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | ||| | ||| | ||| |||| || |||||||| || ||||| || Sbjct 702341 ACATTATCAATGGTATCAGAACTTTCAACCTCCAAAGTTATGGTTTTTCCAGTCAAAGTC 702282 Query 20192 TTGACAAAAATTTGCAT 20208 || ||||| |||||||| Sbjct 702281 TTAACAAAGATTTGCAT 702265 >seq25741 Length=849835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || ||||||||||| || ||||||||||| ||| ||| |||||| Sbjct 274787 CACCAAGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCTGCCAAGGTTCGGCCATCTTC 274728 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||||| || ||| |||| ||||||||||| || || | ||||||||||| Sbjct 274727 AAGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATACCTTCTTTGTCTTG 274668 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 ||| || ||| || | | ||| || || || | ||| || | ||| ||||| | Sbjct 274667 AATCTTAGCTTTGACATTGTCAATAGTGTC-AGAGCTCTCCACCTCAAGGGTGATGGTCT 274609 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || | || |||||||| |||||||| Sbjct 274608 TTCCAGTGAGGGTCTTGACAAAGATTTGCAT 274578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || ||||||||||| || ||||||||||| ||| ||| |||||| Sbjct 296427 CACCAAGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCTGCCAAGGTTCGGCCATCTTC 296486 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||||| || ||| |||| ||||||||||| || || | ||||||||||| Sbjct 296487 AAGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATACCTTCTTTGTCTTG 296546 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 ||| || ||| || | | ||| || || || | ||| || | ||| ||||| | Sbjct 296547 AATCTTAGCTTTGACATTGTCAATAGTGTC-AGAGCTCTCCACCTCAAGGGTGATGGTCT 296605 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || | || |||||||| |||||||| Sbjct 296606 TTCCAGTGAGGGTCTTGACAAAGATTTGCAT 296636 >seq21071 Length=2748687 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 || ||||| || || || |||||||| ||| || | |||||||||||| || || Sbjct 2708277 GTGGATTCCTTCTGAATATTGTAATCTGCCAAGGTACGACCATCTTCCAATTGCTTCCCA 2708336 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 ||| |||| |||||||| ||||| || | ||||| ||||| ||| || |||| Sbjct 2708337 GCAAAAATGAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATCTTAGCTTTC 2708396 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | | ||| || ||| |||| |||| ||||||||| || || |||| || Sbjct 2708397 ACATTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTC 2708456 Query 20192 TTGACAAAAATTTGCAT 20208 || ||||| || ||||| Sbjct 2708457 TTCACAAATATCTGCAT 2708473 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | ||||||||||||||| || || || || || || || || ||||| | Sbjct 2708475 CCTCCACGAAGCCTCAACACCAAATGCAGAGTGGACTCCTTCTGGATATTATAATCAGCA 2708534 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||| || || || ||| | ||||||||||| || || || Sbjct 2708535 AGAGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGA 2708594 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| || ||| ||||| | | | | ||| | ||| | Sbjct 2708595 ATCCCCTCTTTGTCCTGTATCTTTGCCTTCACGTTATCGATGGTATCAGAACTTTCAACT 2708654 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| |||||||| || || ||||| |||||||| Sbjct 2708655 TCTAAAGTTATTGTTTTTCCGGTCAAAGTCTTAACAAAGATTTGCAT 2708701 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| ||||| || || |||||||| || || ||||| ||||| | Sbjct 2708703 CCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCTGCA 2708762 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| |||||| | ||||| || ||| | ||||||||||| || || ||| Sbjct 2708763 AGGGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGG 2708822 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || || || ||| || |||||| | | | | | ||| | ||| Sbjct 2708823 ATACCCTCCTTATCTTGAATCTTGGCTTTCACATTGTCTATGGTATCTGAACTCTCCACC 2708882 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || ||||| ||||| ||||| Sbjct 2708883 TCCAAGGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 2708929 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| ||||| || | |||||| ||| || |||||||||||| Sbjct 2704278 TGCAGGGTGGATTCCTTTTGAATATCGTAATCTTCCAAGGTACGCTCATCTTCCAATTGC 2704337 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| ||||||||||||| ||||| || | ||| || || || ||| || Sbjct 2704338 TTCCCAGCAAAAATAAGCCTCTGCTGATCCGGTGGAATGCCCTCCTTTTCCTGAATCTTA 2704397 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | ||| | ||| | ||| || | || ||||| || || ||| Sbjct 2704398 GCTTTCACATTTTCAATTGTATCAGAACCTTCAACCTCTAAAGTTATGGTCTTTCCCGTC 2704457 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || ||||||||||||||||| Sbjct 2704458 AAGGTCTTGACAAAAATTTGCAT 2704480 >seq14541 Length=1818127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 19970 TTTTATCATTTT-CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| | ||||| | || |||||| ||||| || ||||| ||||| |||||||| Sbjct 1704033 TTTAATCATGGTACCTCCCCTTAGCCTCAAGACCAAGTGAAGTGTTGATTCCTTTTGTAT 1703974 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||| ||||| | | ||| | |||||||| || || || ||| |||| | |||||| Sbjct 1703973 GTTATAATCAGCAAGAGTGCGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTG 1703914 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||| ||||| Sbjct 1703913 CTGGTCAGGAGGGATACCTTCCTTGTC 1703887 >seq117 Length=1280681 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | |||||| ||||| || ||||| ||||| |||||||| Sbjct 938111 TTTAATCATGGTTCCTCCCCTGAGCCTCAAGACCAAGTGAAGTGTTGATTCCTTTTGTAT 938170 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||| ||||| | | ||| | |||||||| || || || ||| |||| | |||||| Sbjct 938171 GTTATAATCAGCAAGAGTGCGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTG 938230 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||| ||||| Sbjct 938231 CTGGTCAGGAGGGATACCTTCCTTGTC 938257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419417577940770