Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq22486 105 6e-18 seq31939 100 2e-16 seq25741 100 2e-16 seq21530 100 2e-16 seq17534 98.7 8e-16 seq646 93.3 4e-14 seq7180 87.8 2e-12 >seq22486 Length=836894 Score = 105 bits (116), Expect = 6e-18 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 787434 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 787375 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | |||||||||| || || Sbjct 787374 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 787315 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| || | ||||||| ||| | || || |||||||| | Sbjct 787314 GCCTTCACGTTGTCG--ATGGTGTCCGAAGACTCCACCTCCAACGTGATCGTTTTACCCG 787257 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || |||||||| || |||||||||||| Sbjct 787256 TTAGGGTTTTCACGAAGATCTGCATCGTG 787228 >seq31939 Length=7596472 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 357455 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 357396 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | |||||||||| || || Sbjct 357395 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 357336 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| || | ||||||| ||| | || || || ||||| | Sbjct 357335 GCCTTCACGTTGTCG--ATGGTGTCAGAAGACTCCACCTCAAGGGTGATCGTCTTACCCG 357278 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTGTC 48732 | || |||||||| || |||||||||||||| Sbjct 357277 TTAGGGTTTTCACGAAGATCTGCATCGTGTC 357247 >seq25741 Length=849835 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || ||||| ||| ||||||||| ||||||||||||| ||| ||| || | |||| Sbjct 273875 CACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAG-CAAGTGTACGTCCATCCT 273817 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | |||| | ||| ||||| ||| || | | ||||||||| Sbjct 273816 CAAGCTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCCGGTGGGATCCCTTCCTTGTCTT 273757 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||||||||| | | |||| ||| | || || || | Sbjct 273756 GAATCTTGGACTTTACATTATCTATGGTATCTGAACTCTCCACCTCAAGGGTGATTGTCT 273697 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||||| || || || || || |||||| Sbjct 273696 TACCAGTGAGTGTCTTAACGAAGATTTGCATC 273665 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||| ||||||||||||||||||||||| ||| ||| || | |||| Sbjct 297111 CACCAAGTGTAGAGTGGACTCCTTTTGAATGTTGTAATCAG-CAAGTGTACGTCCATCCT 297169 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | |||| | ||| ||||| || || | | ||||||||| Sbjct 297170 CAAGCTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCTT 297229 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||||||||| | | |||| ||| | || || || | Sbjct 297230 GAATCTTGGACTTTACATTATCTATGGTATCTGAACTCTCCACCTCAAGGGTGATTGTCT 297289 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||||| || || ||||| || |||||| Sbjct 297290 TACCAGTGAGTGTCTTAACAAAGATTTGCATC 297321 >seq21530 Length=1712192 Score = 100 bits (110), Expect = 2e-16 Identities = 153/212 (72%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||||| ||||||||||| |||| ||| || || ||||||| || || Sbjct 1518518 TGAAGAGTACTCTCCTTCTGAATGTTGTAGTCAG-CAAGGGTACGGCCGTCCTCAAGTTG 1518576 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || |||| | ||| ||||| ||| || | | |||||||||| || || Sbjct 1518577 CTTTCCGGCGAAAATGAGACGTTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTT 1518636 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| || | ||| ||| | || ||||| |||||| Sbjct 1518637 GGCCTTGACGTTGTCG--ATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTACCG 1518694 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGTC 48732 ||||| || || || || ||||||||| |||| Sbjct 1518695 GTGAGGGTCTTGACGAAGATCTGCATC-TGTC 1518725 >seq17534 Length=674752 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || || || || ||| ||||||||||||| Sbjct 416359 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGCCCGTCCTCCAGCTG 416301 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 416300 CTTTCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 416241 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | || || || | ||||| ||| | ||||| || || || || Sbjct 416240 CGCCTTCACATTGTCGATTGTGTCCGATGACTCTACCTCTAGGGTTATCGTCTTCCCCGT 416181 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || |||||||| || |||||||| ||| || Sbjct 416180 TAGGGTTTTCACGAATATCTGCATTGTGGCT 416150 >seq646 Length=2337744 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| ||||| ||||| |||||||| || | | || || |||| || ||||| Sbjct 1860589 TGAAGCGTGGATTCCTTCTGAATATTGTAATCGGCGAGAGTG-CGTCCGTCTTCGAGCTG 1860531 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||||||| || | | |||||| ||| ||| || Sbjct 1860530 CTTCCCAGCGAAGATAAGACGCTGCTGATCCGGTGGAATCCCTTCCTTATCCTGAATCTT 1860471 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | || ||||| | | |||| ||| | || || ||||| ||||| Sbjct 1860470 CGCCTTCACGTTATCGATCGTATCAGAACTCTCCACCTCCAGAGTAATAGTTTTCCCGGT 1860411 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || ||||| || ||||||||| Sbjct 1860410 GAGCGTCTTCACGAAGATCTGCATC 1860386 >seq7180 Length=1421306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | | ||| | |||||| || ||||||||||| |||||||| || Sbjct 1039279 CCTCCGCGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCA 1039220 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||| |||| |||||| ||| || | || | ||| ||||||||| || Sbjct 1039219 AGGGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGA 1039160 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTT----GATAGACGCTATGGTATCGGTAGACTC 48675 | || |||||| ||| || ||| |||| | || | || || || | ||||| Sbjct 1039159 ATACCTTCCTTATCCTGGATCTTC-GCTTTCACGTTA---TCGATTGTGTCAGAGGACTC 1039104 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || ||||| ||||| || |||||||| || ||||||||| Sbjct 1039103 TACCTCTAGCGTAATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 1039052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| ||||| || ||||| || || || || | ||||| ||||| Sbjct 1039483 TGAAGCGTGGACTCCTTCTGAATATTATAATCTGC-AAGCGTGCGTCCATCCTCAAGCTG 1039425 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||||||| || | | ||||| ||| ||| || Sbjct 1039424 CTTCCCTGCGAAGATAAGACGCTGCTGATCCGGTGGAATCCCCTCCTTATCCTGAATCTT 1039365 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | || ||||| | | |||| ||| | || || ||||| ||||| Sbjct 1039364 TGCCTTCACGTTATCGATCGTATCAGAACTCTCCACCTCCAGAGTAATCGTTTTTCCGGT 1039305 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || ||||| || ||||||||| Sbjct 1039304 GAGCGTCTTCACGAAGATCTGCATC 1039280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421080905253170