Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq12414 114 7e-21 seq31939 111 8e-20 seq26816 111 8e-20 seq20518 111 8e-20 seq24633 109 3e-19 seq20448 109 3e-19 seq15262 109 3e-19 seq29658 107 1e-18 seq33140 105 3e-18 seq31102 105 3e-18 seq10806 105 3e-18 seq3706 105 3e-18 seq1636 105 3e-18 seq711 105 3e-18 seq30104 104 1e-17 seq10397 104 1e-17 seq7132 104 1e-17 seq29668 102 4e-17 seq21399 102 4e-17 seq229 100 1e-16 seq28429 96.9 2e-15 seq10780 95.1 6e-15 seq23836 91.5 8e-14 seq28979 86.0 3e-12 seq18834 84.2 1e-11 seq8214 82.4 4e-11 >seq12414 Length=724951 Score = 114 bits (126), Expect = 7e-21 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| || || || | ||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 10085 AGAATAAAAAATAAGTGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 10144 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 10145 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 10179 >seq31939 Length=7596472 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAAT-CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||| ||| ||| |||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 1299858 AAACAATACAACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 1299799 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 1299798 CGCTCTAACCAACTGAGCTAATAGGCC 1299772 >seq26816 Length=218608 Score = 111 bits (122), Expect = 8e-20 Identities = 87/103 (84%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| |||| ||||||| | | ||| |||||||| | | |||||||| ||||||| Sbjct 97065 AAATACAGAA---ATAAAAAGTTACATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTT 97121 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| ||||||||||||||| |||| Sbjct 97122 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 97164 >seq20518 Length=2562168 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| | |||||| |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 2164700 AAAATAACAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 2164641 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 2164640 CGCTCTAACCAACTGAGCTAATAGGCC 2164614 >seq24633 Length=1031877 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 364892 CAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 364951 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 364952 CCAACTGAGCTAATAGGCC 364970 >seq20448 Length=1126904 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| || ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 23110 AAAAAAATATAAAAATGGCCCATGTAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 23051 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||| |||| |||| Sbjct 23050 GACGCTCTAACCAACTGAGTTAATAGGCC 23022 >seq15262 Length=1937660 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 894753 CAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 894694 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 894693 CCAACTGAGCTAATAGGCC 894675 >seq29658 Length=1595399 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 892199 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 892258 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 892259 CAACTGAGCTAATAGGCC 892276 >seq33140 Length=670153 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 4553 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 4612 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 4613 CTGAGCTAATAGGCC 4627 >seq31102 Length=3942990 Score = 105 bits (116), Expect = 3e-18 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1337881 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1337940 Query 11516 TGAGCTAATGGGCCGTCGACGATTGTGATTTT 11547 ||||||||| |||| | || ||| ||||| Sbjct 1337941 TGAGCTAATAGGCCATATTTGAATGTTATTTT 1337972 >seq10806 Length=1062488 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 489743 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 489684 Query 11513 AACTGAGCTAATGGGCC 11529 | |||||||||| |||| Sbjct 489683 AGCTGAGCTAATAGGCC 489667 >seq3706 Length=984618 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 271930 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 271989 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 271990 CTGAGCTAATAGGCC 272004 >seq1636 Length=1229770 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1153506 AATGAAAAATAAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1153563 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 1153564 GACGCTCTAACCAGCTGAGCTAATAGGCC 1153592 >seq711 Length=1476025 Score = 105 bits (116), Expect = 3e-18 Identities = 78/91 (86%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||| |||| |||||||||| | | |||||||| ||||||| ||||||||||| Sbjct 641046 ATGAAAAAACAAACTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGC 640987 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||| |||||||||||||||||||| Sbjct 640986 ACCACGCTCTAACCAACTGAGCTAATGGGCC 640956 >seq30104 Length=376893 Score = 104 bits (114), Expect = 1e-17 Identities = 85/102 (83%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 || |||||| ||||||| | || |||||| ||| | | |||||||| |||||||| Sbjct 17842 AAAATAGAA--AATAAAAGCTTTAAACTTGGCCTATGCAGGTCTCGAACCTGCGACCTTC 17785 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| ||||||||||||||| |||| Sbjct 17784 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 17743 >seq10397 Length=801917 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 342432 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 342491 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 342492 TGAGCTAATAGGCC 342505 >seq7132 Length=1435842 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1229623 TGGCCCATGCAGGTCTCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1229564 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1229563 TGAGCTAATAGGCC 1229550 >seq29668 Length=988701 Score = 102 bits (112), Expect = 4e-17 Identities = 84/101 (83%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||| ||| ||| ||| ||| ||||||||| | | |||||||| ||||||||| Sbjct 244656 AAATATGTAAT-AATCTGAAAACAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 244712 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| ||||||||||||||| |||| Sbjct 244713 CGTTATTAGCACGACACTCTAACCAACTGAGCTAATAGGCC 244753 >seq21399 Length=699063 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 31054 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 31113 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 31114 CAGCTGAGCTAATAGGCC 31131 >seq229 Length=1461389 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 967297 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 967238 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 967237 TGAGCTAATAGGCC 967224 >seq28429 Length=1870604 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 352477 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 352418 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 352417 CTGAGCTAATAGGCC 352403 >seq10780 Length=989171 Score = 95.1 bits (104), Expect = 6e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 850173 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 850231 >seq23836 Length=129350 Score = 91.5 bits (100), Expect = 8e-14 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11435 AGAATTAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||||||| |||||| | ||||||||| | | ||| ||||| ||| ||||||||| Sbjct 51630 AGAATTAATTTAAAAATTTTAATGGCCCATGCATGAATCAAACCTGTGACTTTCGCGTTA 51571 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAAT 11524 ||||||||||||| | ||||| ||||||||| Sbjct 51570 TTAGCACGACGCTTTAACCAATTGAGCTAAT 51540 >seq28979 Length=191760 Score = 86.0 bits (94), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||||| ||||| || ||| ||| | ||| ||||||||| ||| ||| ||||||| Sbjct 42336 AATTAATTTAAAATTAA--TGGTCCAAGCAAGAATCGAACCTATGACTTTCAAGTTATTA 42279 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||| | ||||||||||||||| |||| Sbjct 42278 GCACAACGCTTTAACCAACTGAGCTAATAGGCC 42246 >seq18834 Length=147005 Score = 84.2 bits (92), Expect = 1e-11 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 |||||||| ||||| || ||||||| | ||| || |||||| ||| ||| |||||| Sbjct 121441 GAATTAATTTAAAATTAA--TGGCCCAAGCAAGAATTGAACCTGTGACTTTCAGGTTATT 121384 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||| | ||||||||||||| || ||| Sbjct 121383 AGCACAACGCTTTAACCAACTGAGCTATTGAGCC 121350 >seq8214 Length=134675 Score = 82.4 bits (90), Expect = 4e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | || |||||| |||||||| | |||||||||| ||||| | |||||| Sbjct 8213 TGGCCCATGCAGGTATTGAACCTGCGACCTTCACATTATTAGCACAACGCTTTAACCAAC 8154 Query 11516 TGAGCTAATGGG 11527 ||||||||| || Sbjct 8153 TGAGCTAATAGG 8142 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261385489730920