Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5819 143 4e-30 seq21071 136 6e-28 seq17129 136 6e-28 seq31102 123 4e-24 seq26085 123 4e-24 seq646 111 2e-20 seq28992 109 9e-20 seq28490 98.7 2e-16 seq4228 87.8 3e-13 seq23850 86.0 1e-12 seq29280 80.6 4e-11 seq8419 80.6 4e-11 >seq5819 Length=483453 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || |||||||| ||||| || || || |||||||| || |||||||| || Sbjct 333983 GATAACATTCAGGGAATCACGAAGCCCGCGATTCGGCGTCTGGCGCGACGTGGTGGCGTG 333924 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||||||||| | ||| | |||| | |||||||||||| || Sbjct 333923 AAGCGTATCAGTGGTCTCATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTCCTCGAG 333864 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | || ||| || |||||| ||||||||| || ||||| ||||| | Sbjct 333863 AACGTCATTCGCGACGCTGTCACCTATACTGAGCACGCTCGCCGCAAGACCGTCACTGCT 333804 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| | || || || | || | || ||| | | | |||||||| || |||| Sbjct 333803 ATGGACGTTGTTTACGCTCTCAAGAGGCAGGGCAGGACCCTCTATGGTTTCGGTGGTTA 333745 >seq21071 Length=2748687 Score = 136 bits (150), Expect = 6e-28 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || |||||||||||||| || || || |||||||| | |||||||| ||| Sbjct 946465 GATAACATTCAGGGAATCACCAAGCCCGCGATTCGCCGTCTGGCCAGACGTGGTGGCGTC 946406 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||||||||| | ||| | |||| | |||||||| || || Sbjct 946405 AAGCGTATCAGTGGTCTTATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTAGAG 946346 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||| ||| || ||| || || |||||| || ||||| ||||| || Sbjct 946345 AACGTCATTCGTGACGCTGTCACCTACACTGAACACGCTCGCCGCAAGACCGTCACTGCC 946286 Query 16640 ATGGA 16644 ||||| Sbjct 946285 ATGGA 946281 >seq17129 Length=471216 Score = 136 bits (150), Expect = 6e-28 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || |||||||||||||| || || || |||||||| | |||||||| ||| Sbjct 387634 GATAACATTCAGGGAATCACCAAGCCCGCGATTCGCCGTCTGGCCAGACGTGGTGGCGTC 387575 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||||||||| | ||| | |||| | |||||||| || || Sbjct 387574 AAGCGTATCAGTGGTCTTATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTAGAG 387515 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||| ||| || ||| || || |||||| || ||||| ||||| || Sbjct 387514 AACGTCATTCGTGACGCTGTCACCTACACTGAACACGCTCGCCGCAAGACCGTCACTGCC 387455 Query 16640 ATGGA 16644 ||||| Sbjct 387454 ATGGA 387450 >seq31102 Length=3942990 Score = 123 bits (136), Expect = 4e-24 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| |||||||| || || || || || ||| ||||||| | || Sbjct 2383610 CTCCGCGATAACATCCAGGGAATCACAAAACCCGCCATTCGCCGTTTGGCTCGCAGAGGC 2383551 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||| | || ||| | |||||||||| | || | || | ||||||||| Sbjct 2383550 GGCGTCAAGAGAATCAGTGGCCTCATCTATGAAGAAACCCGCGGCGTCCTTAAGATCTTC 2383491 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||| | || ||| | ||| |||||||| |||| | |||||||| Sbjct 2383490 CTCGAGAACGTTATTCGCGACGCTGTTACCTACACCGAGCATGCTAGGAGGAAGACTGTT 2383431 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | |||||| | || ||||| | || | || ||| | | | |||||||| || Sbjct 2383430 ACCGCTATGGATGTTGTTTATGCTCTCAAGAGGCAGGGCAGGACTCTCTATGGTTTCGGT 2383371 Query 16694 AGTTAA 16699 ||||| Sbjct 2383370 GGTTAA 2383365 >seq26085 Length=1440921 Score = 123 bits (136), Expect = 4e-24 Identities = 180/253 (71%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || |||||||| || || || || ||| ||||||| | ||| Sbjct 391522 CTTCGTGACAACATCCAGGGTATCACCAAACCCGCAATTCGGCGTTTGGCTCGCAGAGGT 391581 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || ||| | |||| || |||| |||| || | ||||| ||| Sbjct 391582 GGTGTTAAGAGAATCAGTGGTCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATATTC 391641 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||| | || ||| | ||| ||||||||||||| | | ||||| || Sbjct 391642 CTCGAGAACGTTATTCGCGACGCTGTTACCTACACCGAGCACGCTAGAAGAAAGACCGTT 391701 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | |||||| | || ||||| | || | || ||| | | | || ||||| || Sbjct 391702 ACCGCTATGGATGTTGTTTATGCTCTCAAGAGGCAGGGCAGGACTCTCTACGGTTTCGGT 391761 Query 16694 AGTTAATCTTCTA 16706 |||||| ||||| Sbjct 391762 GGTTAAT-TTCTA 391773 >seq646 Length=2337744 Score = 111 bits (122), Expect = 2e-20 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||| ||||| || || || || |||| | ||||| || ||| Sbjct 949873 GACAACATCCAGGGGATCACTAAGCCTGCGATTCGGCGCTTGGCGAGGCGTGGCGGCGTC 949932 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| ||||||| |||| ||| | |||||||||||| | Sbjct 949933 AAGCGTATCAGCGGTCTCATCTACGAAGAGACGCGTGGCGTTCTCAAGATCTTCCTCGAA 949992 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | || ||| | || |||||||||||| || || || ||||| || Sbjct 949993 AACGTCATTCGCGACGCTGTTACTTACACCGAGCACGCTCGCCGCAAAACCGTCACTGCC 950052 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| | || ||||| | ||| | || ||| | | |||| ||||| || |||| Sbjct 950053 ATGGACGTTGTTTATGCCCTCAAAAGACAGGGCAGGACCCTTTACGGTTTCGGTGGTTA 950111 >seq28992 Length=961360 Score = 109 bits (120), Expect = 9e-20 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| || |||||||||||||| || || || ||| ||||||| | ||||| Sbjct 449120 CGCGATAACATTCAGGGAATCACCAAGCCTGCGATTCGGCGTTTGGCTCGCAGGGGTGGT 449061 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| || ||| | |||| || |||| |||| || | |||||||| || Sbjct 449060 GTGAAGCGTATCAGTGGTCTCATCTACGAGGAGACACGTGGCGTGCTCAAGATCTTTCTG 449001 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||| || | ||| || |||||||||| | ||||| || || Sbjct 449000 GAGAACGTGATTCGTGACGCCGTTACCTACACTGAGCACGCTAGGAGAAAGACCGTTACG 448941 Query 16637 TCCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 448940 GCAATGGATGTGGTTTATGC 448921 >seq28490 Length=695882 Score = 98.7 bits (108), Expect = 2e-16 Identities = 170/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||| ||||| ||||| || || || || ||| | | || | | || Sbjct 224616 TCTTCGTGATAACATTCAAGGTATCACGAAACCTGCGATTCGTAGGTTAGCGAGAAGAGG 224557 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| ||| ||||||| || | | | ||| ||||||| || Sbjct 224556 TGGCGTTAAGAGGATCAGTGGTTTGATCTATGAGGAAACCAGAGGAGTTCTGAAGATTTT 224497 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| || | |||||| | ||| ||||||||||||| | ||||| || Sbjct 224496 CTTGGAGAACGTGATTCGAGATGCTGTGACCTACACCGAGCACGCTAGGAGGAAGACGGT 224437 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | || ||||| | || | || || | | | || |||||||| Sbjct 224436 GACTGCCATGGATGTGGTTTATGCGCTCAAGAGGCAGGGAAGGACCCTCTACGGTTTTGG 224377 Query 16693 AAGTTAA 16699 | | ||| Sbjct 224376 AGGCTAA 224370 >seq4228 Length=46361 Score = 87.8 bits (96), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||||| | ||||||| || | || | | | ||||| | | || Sbjct 42781 CTTCGCGACAACATCCAAGTA-TCACCAAACCTACAATTCCGCATTTGGCTTGGAGAGGA 42723 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 | || ||| | || ||| | |||| | || | || |||||| | ||||||||| Sbjct 42722 GATGTTAAGAGAATCAGTGGTCTTATCTACAAGGAAACTCATGATGTCCTCAAGATCTTC 42663 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||||| | ||||| | | ||| || |||||| ||| | ||||||||| Sbjct 42662 CTCGAGAATGTTATTCCTGATGTTGTTACCTACACTGAGCACACTAGGAGGAAGACTGTC 42603 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| | |||||| | || ||||| Sbjct 42602 ACCACTATGGATGTTGTTTATGC 42580 >seq23850 Length=199744 Score = 86.0 bits (94), Expect = 1e-12 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||| ||||||||||| || || || || ||| | | || | | || Sbjct 50127 TCTTCGTGACAACATTCAAGGAATCACGAAACCTGCGATTCGTAGGTTAGCGAGAAGAGG 50068 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| ||| | || || || | | | ||| ||||||| || Sbjct 50067 TGGCGTGAAGAGGATCAGTGGTTTGATTTACGAGGAAACCAGAGGAGTTCTGAAGATATT 50008 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| || | |||||| | ||| || |||||||||| | || ||||| Sbjct 50007 CTTGGAGAACGTGATTCGCGATGCTGTAACCTACACTGAGCACGCTAGGAGGAAAACTGT 49948 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| |||| ||||| | || | || || | | | ||||| ||||| Sbjct 49947 TACTGCTATGGATGTCGTTTATGCTCTCAAGAGACAGGGAAGGACCCTCTATGGCTTTGG 49888 Query 16693 AAGTTAA 16699 | | ||| Sbjct 49887 AGGCTAA 49881 Score = 86.0 bits (94), Expect = 1e-12 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||| || ||||| || || || || ||| | | || | | || Sbjct 88382 TCTTCGTGACAACATCCAGGGCATCACGAAACCTGCGATTCGTAGGTTAGCGAGAAGAGG 88323 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| ||| |||| || || | | | ||| ||||||| || Sbjct 88322 TGGCGTGAAGAGGATCAGTGGTTTGATCTACGAGGAAACCAGAGGAGTTCTGAAGATATT 88263 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| || | |||||| | ||| || |||||||||| | ||||| || Sbjct 88262 CTTGGAGAACGTGATTCGCGATGCTGTGACCTACACTGAGCACGCTAGGAGGAAGACGGT 88203 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| | || | || || | | | ||||||||||| Sbjct 88202 TACTGCTATGGATGTTGTTTATGCTCTTAAGAGGCAGGGAAGGACCCTCTATGGTTTTGG 88143 Query 16693 AAGTTAA 16699 | | ||| Sbjct 88142 AGGCTAA 88136 Score = 80.6 bits (88), Expect = 4e-11 Identities = 140/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||| || || || || || || || || ||| | | || | | || Sbjct 119383 TCTTCGCGACAACATTCAGGGCATTACGAAACCTGCGATTCGTAGGTTAGCGAGAAGAGG 119324 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| ||| |||| || || | | | ||| ||||||| || Sbjct 119323 TGGCGTGAAGAGGATCAGTGGTTTGATCTACGAGGAAACCAGAGGGGTTCTGAAGATATT 119264 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| || | |||||| | |||||||||||||||| | ||||| || Sbjct 119263 CTTGGAGAACGTGATTCGCGATGCTGTGACTTATACCGAGCACGCTAGGAGGAAGACGGT 119204 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 || |||||||| | || ||||| Sbjct 119203 TACTGCCATGGATGTTGTTTATGC 119180 >seq29280 Length=88021 Score = 80.6 bits (88), Expect = 4e-11 Identities = 140/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||| ||||||||||| || || || || ||| | | || | | || Sbjct 52630 TCTGCGCGATAACATTCAAGGAATCACGAAACCTGCGATTCGTAGGTTAGCGAGAAGAGG 52689 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || | || ||| ||| |||| || || | | | ||| ||||||| || Sbjct 52690 TGGCGTGAAAAGGATCAGTGGTTTGATCTACGAGGAAACCAGAGGAGTTCTGAAGATATT 52749 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| || | ||||||| | ||| || |||||||||| | ||||| || Sbjct 52750 CTTGGAGAACGTGATTCGTGATGCTGTGACCTACACTGAGCACGCTAGGAGGAAGACAGT 52809 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 || | ||||| | || ||||| Sbjct 52810 GACTGCTATGGACGTGGTTTATGC 52833 >seq8419 Length=271332 Score = 80.6 bits (88), Expect = 4e-11 Identities = 121/172 (70%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 ||||||||||| ||||| || || || || || ||||| || | ||||| || || ||| Sbjct 98546 AACATCCAAGGGATCACAAAACCTGCGATTCGGCGTCTCGCGAGGCGTGGCGGCGTTAAG 98487 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 || || || | |||| || |||| |||| | | ||||| |||||| | | | Sbjct 98486 CGAATCAGCGGCCTCATCTACGAGGAGACACGTGGCATCCTCAAGATATTCCTCGAAAAC 98427 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCA 16634 || || | ||||||| | ||| ||||| |||||| || |||| ||||| Sbjct 98426 GTGATTCGTGATGCTGTAACCTACACCGAACACGCTCGCCGCAAGATTGTCA 98375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79044872436810