Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq24624 515 1e-141 seq29915 343 4e-90 seq32525 336 6e-88 seq6217 131 5e-26 seq20192 109 2e-19 seq29178 93.3 1e-14 seq646 93.3 1e-14 seq31379 86.0 2e-12 >seq24624 Length=74067 Score = 515 bits (570), Expect = 1e-141 Identities = 657/897 (73%), Gaps = 6/897 (1%) Strand=Plus/Minus Query 19383 TTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 19442 ||||| || | ||||| || || || | |||||||| ||||| || |||||||| ||| Sbjct 18449 TTTATTATCACTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTT 18390 Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAAT 19502 || || || || | || ||||||||||| |||||||| || | |||| | || Sbjct 18389 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 18330 Query 19503 GCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATA 19561 || ||||| ||||||||||||| || |||||||| |||| || | ||||| |||||||| Sbjct 18329 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGC-GGCATCTGTTGATGAATGGTTATA 18271 Query 19562 CAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGC 19621 ||||||||||| ||| |||| || | | ||||||||| | || ||||| ||| Sbjct 18270 TAACGGCGGTCCTTATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCTACAT 18211 Query 19622 TGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATA 19681 || | |||||||||| || | || || ||| | || ||||| || ||||| Sbjct 18210 GGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATA 18151 Query 19682 TACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGA 19740 | |||| || | |||| ||| |||||| ||||| | | || || |||| || || | Sbjct 18150 TTCAGCTCCTGTTGCAGCCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCAGGGAA 18092 Query 19741 GTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCC 19800 | ||| |||||||||||||| || || || ||||||| || |||||| | ||||| | Sbjct 18091 GCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTC 18032 Query 19801 AAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCG 19860 | || | || ||||| ||||||||||| || |||||| | | ||| ||||| ||||||| Sbjct 18031 AGGCTAAGCATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCG 17972 Query 19861 GTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAA 19920 | || || | ||| ||||||||| || ||||| ||||| | |||| ||||| Sbjct 17971 GCGGCTCCTTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAA 17912 Query 19921 CAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATA 19980 | || || ||| ||| || | || || | || || ||||| ||||| || |||| Sbjct 17911 CCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATA 17852 Query 19981 ATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATA 20040 ||||||| ||||| || || || ||||| ||||||| || |||||||| |||||| | Sbjct 17851 ATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACA 17792 Query 20041 ATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCT 20100 |||||||||||||||||||||| | ||| ||| || || || || || ||| ||||| Sbjct 17791 ATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCG 17732 Query 20101 CCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAG 20160 | | || ||| ||||||||||||||||| | |||||||| || || ||||| || |||| Sbjct 17731 CTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAG 17672 Query 20161 TTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTC 20219 ||||| ||||| || |||| || ||||||||| | | || |||||||||| Sbjct 17671 TTGATAGTCAA-GGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTT 17613 Query 20220 GGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTCG 20276 || | ||||| ||||| || || ||||||||||| ||||| || ||| ||||| || Sbjct 17612 GGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCTGCG 17556 >seq29915 Length=314255 Score = 343 bits (380), Expect = 4e-90 Identities = 423/573 (74%), Gaps = 4/573 (1%) Strand=Plus/Plus Query 19503 GCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATA 19561 || ||||| ||||||||||||| || ||||||| ||||| || | ||||| |||||||| Sbjct 233391 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAG-CGGCATCTATTGATGAATGGTTATA 233449 Query 19562 CAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGC 19621 ||||||| ||| ||| |||| |||| | ||||||||| | || ||||| ||| Sbjct 233450 TAACGGCGATCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACAT 233509 Query 19622 TGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATA 19681 || | |||||||||| || | || || ||| | || ||||| || ||||| Sbjct 233510 GGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATA 233569 Query 19682 TACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGA 19740 | |||| || | |||| ||| |||||| ||||| | | || || |||| || || | Sbjct 233570 TTCAGCTCCTGTTGCAGCCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCAGGGAA 233628 Query 19741 GTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCC 19800 | ||| |||||||||||||| || || || |||||||| || |||||| | ||||| | Sbjct 233629 GCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTTCAATTTTATGATTGTATTTC 233688 Query 19801 AAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCG 19860 | || || || ||||| ||||||||||| || |||||| | ||||| ||||| ||||||| Sbjct 233689 AGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCG 233748 Query 19861 GTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAA 19920 | || || || ||| ||||||||| || ||||| ||||| | |||| ||||| Sbjct 233749 GCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAA 233808 Query 19921 CAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATA 19980 | || || ||| ||| || | || || | || || ||||| ||||| || |||| Sbjct 233809 CCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATA 233868 Query 19981 ATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATA 20040 ||||||| ||||| || || || ||||| ||||||| || |||||||| |||||| | Sbjct 233869 ATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACA 233928 Query 20041 ATTCTCGTTCTTTACATTTCTTTCTTGCTACTT 20073 |||||||||||||||||||||| | ||| ||| Sbjct 233929 ATTCTCGTTCTTTACATTTCTTCTTAGCTGCTT 233961 >seq32525 Length=219324 Score = 336 bits (372), Expect = 6e-88 Identities = 465/648 (72%), Gaps = 2/648 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| || || ||||| | || |||||||| || | Sbjct 125563 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 125622 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||||||| ||| | | || ||| || ||||| |||| ||||| || || || Sbjct 125623 ATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTTATTGCTGCCCCT 125682 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || |||||||| ||||| || || || | || ||||||||| Sbjct 125683 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAAT 125742 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || |||||||| || | |||| | || || ||||| ||||||||||||| || Sbjct 125743 ATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATT 125802 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||| || ||||| || | ||||| |||||||||||||||||||| ||| |||| |||| Sbjct 125803 TGGGGAG-CGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGT 125861 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| || | |||||||||| || | Sbjct 125862 TCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCG 125921 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 || || ||| | || ||||| || |||||| |||| || | |||| ||| ||| Sbjct 125922 TTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGC 125981 Query 19709 TGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 ||| ||| | | || || |||| || || || ||| |||||||||||||| || || Sbjct 125982 TGTTTTTTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAAT 126041 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 || | |||||| || |||||| | ||||| || || | || ||||| ||||||||||| Sbjct 126042 TTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCATCC 126101 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || || ||| ||||||| | || Sbjct 126102 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTATGG 126161 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATC 19936 ||||| |||| | |||| |||||| || || ||| ||| Sbjct 126162 TTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATC 126209 >seq6217 Length=83728 Score = 131 bits (144), Expect = 5e-26 Identities = 141/184 (77%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 19706 TGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTG 19764 |||||| ||||| | | || || |||| || || || ||| |||||||||||||| | Sbjct 30545 TGCTGT-TTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAG 30603 Query 19765 GTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGC 19824 | || || | |||||| || |||||| | ||||| || || | || ||||| ||||||| Sbjct 30604 GAATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGC 30663 Query 19825 ATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGC 19884 |||| || |||||| | ||||| ||||| |||||||| || || || ||| |||||||| Sbjct 30664 ATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGC 30723 Query 19885 ACGG 19888 | || Sbjct 30724 ATGG 30727 >seq20192 Length=443579 Score = 109 bits (120), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 19774 GTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCC 19833 ||||||| || |||||| | ||||| || || || || ||||| ||||||||||| || | Sbjct 96327 GTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTC 96268 Query 19834 ACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTT 19893 ||||| | ||||| ||||| |||||||| || || || ||| ||||||||| || | Sbjct 96267 ACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCT 96208 Query 19894 TGGTTACTTC 19903 |||| ||||| Sbjct 96207 TGGTAACTTC 96198 >seq29178 Length=161839 Score = 93.3 bits (102), Expect = 1e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 || || ||||| |||| || |||||||||| | | || || || ||||| |||| Sbjct 119052 TTTGGTCAAGAGAAAGAAACCAATAATATTGTAGTCGTTCATGGTTATTTTGGCCCATTG 119111 Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 ||||| |||||||| |||||| ||||||||||||||||||||||| ||| Sbjct 119112 ATATTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTACTT 119162 >seq646 Length=2337744 Score = 93.3 bits (102), Expect = 1e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 19506 ATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAA 19564 ||||| || |||||||||| || |||||||| | || || | ||||| ||||||||||| Sbjct 1979614 ATAGGTTTGGACTTTTATCCTATTTGGGAAGC-GACATCTGTTGATGAATGGTTATACAA 1979672 Query 19565 CGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGC 19612 ||||||||| ||| |||| |||| | ||||||||| | || ||||| Sbjct 1979673 CGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGC 1979720 >seq31379 Length=426423 Score = 86.0 bits (94), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 19962 CAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTT 20021 || || ||||| || |||||||||||| ||| || | || ||||| ||||||| || Sbjct 87776 CATGAGGAAGAAACCTATAATATTGTCATTGCTCATGATTATTTTGGTCGATTGATCTTC 87835 Query 20022 CAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTT 20062 ||||||| |||||| |||||| |||||||||||||||| Sbjct 87836 CAATATG--AGTTTCAACAATTCTTGTTCTTTACATTTCTT 87874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144384705356520