Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq24624 461 1e-124 seq29915 293 4e-74 seq32525 279 8e-70 seq13060 125 1e-23 >seq24624 Length=74067 Score = 461 bits (510), Expect = 1e-124 Identities = 629/878 (72%), Gaps = 0/878 (0%) Strand=Plus/Minus Query 211675 TTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTC 211734 || || || || |||| || ||||| || || || ||||| || || |||| || | Sbjct 18437 TTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTA 18378 Query 211735 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTA 211794 | ||||| ||||| ||||| |||||||| || |||| |||| || || ||||| Sbjct 18377 CTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTG 18318 Query 211795 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCT 211854 ||||| |||||||| |||||||| ||| || ||||||| ||| | || || || |||||| Sbjct 18317 CACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAACGGCGGTCCT 18258 Query 211855 TACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGG 211914 || | | | || | |||||| | | || | | |||||||| | ||||| Sbjct 18257 TATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGG 18198 Query 211915 GAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTA 211974 |||||| | ||||| ||||||||||||||||| |||||| |||||||| ||||| Sbjct 18197 GAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 18138 Query 211975 TCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGT 212034 |||| ||| ||||| ||| | | || || | |||||||| || ||||| ||| Sbjct 18137 GCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGT 18078 Query 212035 ATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAAC 212094 |||||| |||| || ||||| || | ||| || ||| | ||||| || || | ||||| Sbjct 18077 ATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAGGCTAAGCATAAT 18018 Query 212095 ATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTC 212154 || |||||||| ||||| || ||| | ||| || ||| | ||||| || | |||||| Sbjct 18017 ATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGCGGCTCCTTATTC 17958 Query 212155 TCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGAT 212214 ||||||||| ||||| | || || ||| | ||| | |||||||| | || Sbjct 17957 AGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 17898 Query 212215 TCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCA 212274 || || | ||||||| || || ||||| ||||| || ||||| || || ||||| Sbjct 17897 TCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCT 17838 Query 212275 CATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTA 212334 ||||| || || || || | |||||||| |||||| |||||||| | |||| Sbjct 17837 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTA 17778 Query 212335 CACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGC 212394 || |||||| | || | |||||||| | || | ||||| ||| || | |||||| || Sbjct 17777 CATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGC 17718 Query 212395 ACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGT 212454 || ||||| |||||| ||||||| ||||| ||||||||||| || |||||| |||| Sbjct 17717 ACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 17658 Query 212455 AAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATG 212514 || || ||| |||| |||| || ||||| |||| ||||||||||||||||| ||| Sbjct 17657 CGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATG 17598 Query 212515 CACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 || ||| | ||||| || || ||||| || || |||| Sbjct 17597 CATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 17560 >seq29915 Length=314255 Score = 293 bits (324), Expect = 4e-74 Identities = 428/605 (71%), Gaps = 0/605 (0%) Strand=Plus/Plus Query 211756 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAA 211815 |||||||| || |||| |||| || || ||||| ||||| |||||||| |||||| Sbjct 233364 TCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAA 233423 Query 211816 GCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCAC 211875 || ||| || ||||||| ||| | || || || | |||||| | | | | | ||| Sbjct 233424 GCGGCATCTATTGATGAATGGTTATATAACGGCGATCCTTATGAACTAATTGTTCTACAC 233483 Query 211876 TTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGT 211935 ||| | | || | | |||||||| | ||||||||||| | ||||| ||| Sbjct 233484 TTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGT 233543 Query 211936 ATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTC 211995 |||||||||||||| |||||| |||||||| ||||| |||| ||| ||||| ||| Sbjct 233544 ATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTC 233603 Query 211996 CTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGA 212055 | | || || | |||||||| || ||||| ||||||||| |||| || ||||| Sbjct 233604 TTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGT 233663 Query 212056 ACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCAT 212115 || ||||| || ||| | ||||| || || || ||||| || |||||||| ||||| || Sbjct 233664 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 233723 Query 212116 ATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTT 212175 ||| |||||| || ||| | ||||| || | ||||| ||||||||| ||||| | Sbjct 233724 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 233783 Query 212176 GTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAG 212235 || || ||| | ||| | |||||||| | || || || | ||||||| Sbjct 233784 GTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 233843 Query 212236 TTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTT 212295 || || ||||| ||||| || ||||| || || ||||| ||||| || || || || | Sbjct 233844 TTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 233903 Query 212296 ATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGG 212355 |||||||| |||||| |||||||| | |||||| |||||| | || | ||| Sbjct 233904 ATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGG 233963 Query 212356 CCTGT 212360 ||||| Sbjct 233964 CCTGT 233968 >seq32525 Length=219324 Score = 279 bits (308), Expect = 8e-70 Identities = 421/596 (71%), Gaps = 2/596 (0%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | ||||| || | | | | ||||| | ||||| Sbjct 125603 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTA 125662 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || || || || || ||||| || ||||| || || || ||||| || || |||| | Sbjct 125663 TCGCTTTTATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGAT 125722 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | ||||| ||||| ||||| |||||||| || |||| |||| || || | Sbjct 125723 CTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAG 125782 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| ||||| |||||||| |||| ||| ||| || ||||||| ||| | ||||| || | Sbjct 125783 GTTTGCACTTTTATCCTATTTGGGGAGCGGCATCTGTTGATGAATGGTTATACAACGGCG 125842 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| | | | | | |||||| | | || | | |||||||| | Sbjct 125843 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTG 125902 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | ||||| ||||||||||||||||| |||||| |||||||| | Sbjct 125903 AGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 125962 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 |||| |||| ||| ||||| || | | || || | |||||||| || |||| Sbjct 125963 CTGTTGCAGCCGCTACTGCTGTTTTTTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAG 126022 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | ||||||||| |||| || |||| || ||||| || ||| | ||||| || || | | Sbjct 126023 ATGGTATGCCTCTAGGAATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGC 126082 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCAT 212149 |||| || |||||||| ||||| || ||| |||||| || ||| | ||||| || | Sbjct 126083 ATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCC 126142 Query 212150 TATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTT-ATCCGTGAAACCAC 212204 ||||| ||||||| | ||||| |||| || | || || ||| | |||||||| Sbjct 126143 TATTCAGTGCTATGTATGGTTC-CTTGGTAACTTTTAGTTTGATCAGGGAAACCAC 126197 >seq13060 Length=2999657 Score = 125 bits (138), Expect = 1e-23 Identities = 250/363 (69%), Gaps = 12/363 (3%) Strand=Plus/Minus Query 194584 AAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACC 194643 |||||||| | ||| || | ||||| || || || ||||| || || ||| ||| Sbjct 2591621 AAACCTGAATTTGTCATTGTAGCTGCAGCCAAAGTTGGTGGCATCCATGCCAACAACACC 2591562 Query 194644 TATCCTGCCGATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTG 194701 || |||||||||||||| | || ||| || || ||||| ||||| |||||| ||| Sbjct 2591561 TACCCTGCCGATTTCATTGCCAT--CAACCTCCAAATCCAGACCAATGTCATTGATTCTG 2591504 Query 194702 CATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGT 194761 | ||||| || || | |||||||||||||||| | ||||| ||||| || || || || | Sbjct 2591503 CTTATCGCAACGGTGCTAAGAAACTATTGTTTTTGGGTTCCTCTTGTATTTACCCCAAAT 2591444 Query 194762 TTCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAAT- 194820 | || ||| ||| | || ||| || ||| || | || || || | ||| Sbjct 2591443 ATGCACCCCAACCGATTCCGGAAGATGCTTTGCTTACTGGACCGTTAGAGCCCACCAATG 2591384 Query 194821 AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCG---TCAG 194877 | || ||||| ||||| ||||| || || || | ||||| || || || | |||| Sbjct 2591383 AATG-GTATGCCATTGCCAAGATTGCTGGGATCAAAATGTGCCAGGCTTACAGAATTCAG 2591325 Query 194878 CAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAAT 194937 || || | | ||||||| || |||||| || || |||| ||||| | || ||| Sbjct 2591324 CA-TAAG--TGGGATGCAATTTCTGGAATGCCCACCAACTTATATGGACCATACGACAAT 2591268 Query 194938 TTT 194940 ||| Sbjct 2591267 TTT 2591265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807220367425200