Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15262 105 2e-17 seq19384 104 6e-17 seq10304 104 6e-17 seq10089 100 7e-16 seq13074 96.9 9e-15 seq6922 96.9 9e-15 seq27061 84.2 6e-11 >seq15262 Length=1937660 Score = 105 bits (116), Expect = 2e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | ||| ||| ||||| |||||||||||||||||||| || || Sbjct 1331980 CAGTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATG 1331921 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || || ||||| || |||||||||||| ||| ||||| || || ||| | ||||||||| Sbjct 1331920 GGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCAT 1331861 Query 111822 TTT 111824 || Sbjct 1331860 GTT 1331858 >seq19384 Length=1547856 Score = 104 bits (114), Expect = 6e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 111702 CAGTTTTATGTA-CACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| ||| ||||| | | ||||| |||||||||||||||||||||||||| Sbjct 820029 CAGTTTTATGTAGCAC-ACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGATAT 820087 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || || |||| |||||||||||| ||| || || | || ||| | || ||||| Sbjct 820088 GGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCA 820147 Query 111821 TTTT 111824 | || Sbjct 820148 TGTT 820151 >seq10304 Length=1623844 Score = 104 bits (114), Expect = 6e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 111702 CAGTTTTATGTA-CACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| ||| ||||| | | ||||| ||||||||||||||||||||||| || Sbjct 849779 CAGTTTTATGTAGCAC-ACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACAT 849837 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || || ||||| |||||||||||| ||| || || | || ||| | || ||||| Sbjct 849838 GGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCA 849897 Query 111821 TTTT 111824 | || Sbjct 849898 TGTT 849901 >seq10089 Length=680993 Score = 100 bits (110), Expect = 7e-16 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || ||| || ||||| || | |||||| | ||| | Sbjct 148430 TTGCTTCCTTGTGTGCATGAAAGATGATAGTATAGAGGGAATATATGACACTTTGAAGGA 148371 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG- 363724 ||||| | ||| ||| || || ||||||||||| | ||||| |||||| Sbjct 148370 GTGTGCAGTCATTAGCAAATCAGCTGGAGGAATTGGTGTTAGTGTTCACAACATTCGTGC 148311 Query 363725 CACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 ||||| | |||||||| || ||||| | |||| | || ||||| | ||||| ||||| Sbjct 148310 CACAGGA-AGTTACATCCGTGGCACAAATGGGACA-TCAAATGGTATTGTTCCAATGCTG 148253 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||||||| || ||||||| | || || || || || ||||| ||| | ||||| Sbjct 148252 CGTGTGTTCAACGATACTGCTCGCTATGTTGATCAAGGGGGAGGCAAGAGGAAAGG 148197 >seq13074 Length=2244089 Score = 96.9 bits (106), Expect = 9e-15 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || || || ||||| || | |||||| | ||| | Sbjct 1143743 TTGCTTCCTTGTGTGCATGAAAGATTATAGTATAGAGGGAATATATGACACTTTGAAGGA 1143684 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG- 363724 |||| | | ||| ||| ||||| ||||||||||| || ||||| ||| || Sbjct 1143683 GTGTGTTGTCATTAGCAAATCAGCAGGAGGAATTGGTGTTAGTATTCACAACATTCATGC 1143624 Query 363725 CACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 ||||| |||||||||| | | ||| | |||| | || ||||| | ||||| ||||| Sbjct 1143623 CACAG-GCAGTTACATTTGTGCCACAACTGGGACA-TCAAATGGTATTGTTCCAATGCTG 1143566 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||||||| | ||||||| | || || || ||||| ||||| ||| | ||||| Sbjct 1143565 CGTGTGTTCAATGATACTGCTCGCTATGTTGATCAGGGGGGAGGTAAGAGGAAAGG 1143510 >seq6922 Length=1215094 Score = 96.9 bits (106), Expect = 9e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | ||| ||| ||||| |||||||||||||||||||| || || Sbjct 296775 CAGTTCTATGTAGCAAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATG 296716 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || || ||||| || |||||||||||| ||| || || || || ||| | || |||||| Sbjct 296715 GGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCAT 296656 Query 111822 TTT 111824 || Sbjct 296655 GTT 296653 >seq27061 Length=934220 Score = 84.2 bits (92), Expect = 6e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || ||| || ||||| || | || || | ||| | Sbjct 848735 TTGCTTCCTTGTGTGTATGAAAGATGATAGTATAGAGGGGATATACGAAACTTTGAAGGA 848676 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | || ||| || || ||||||||||| || || || | ||||||| Sbjct 848675 GTGTGCTATCATCAGCAAATCAGCTGGAGGAATTGGTGTCTCCATTCATGACATTCGTGC 848616 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 |||| |||||| ||||| || ||| || || ||||| | ||||| ||| | | Sbjct 848615 TACAG-GCAGTTATATTCGTGGGACAAATGGGACGTCCAATGGCATTGTTCCAATGTTGC 848557 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||||||| | ||||||| | || || || ||||| ||||| ||| | ||||| Sbjct 848556 GTGTGTTCAATGATACTGCCCGCTATGTTGATCAGGGGGGAGGCAAGAGGAAAGG 848502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302799686938940