Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq646 122 7e-23 seq7180 113 4e-20 seq21796 109 5e-19 seq25741 100 2e-16 seq3517 86.0 5e-12 >seq646 Length=2337744 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||| || ||| ||||||| | || |||||| || Sbjct 1860159 ATGCAAATCTTCGTCAAAACCCTAACCGGTAAAACGATTACGCTAGAGGTCGAGTCCTCT 1860218 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| |||||||| || || || || Sbjct 1860219 GACACCATCGATAACGTGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCACCAGACCAG 1860278 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| || || |||||||| | ||||| | || |||||| || Sbjct 1860279 CAGCGCTTGATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTCGCCGATTACAAT 1860338 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| |||||||| || ||||| | ||| Sbjct 1860339 ATTCAGAAAGAATCGACGCTTCATCTGGTG 1860368 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| |||| || ||| ||||||| | || |||||| | Sbjct 1859927 CAATATGCAGATCTTCGTCAAAACCCTAACCGGTAAAACGATTACGCTAGAGGTCGAGTC 1859986 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||| ||||| | || ||| || || ||||| |||||||| || || || Sbjct 1859987 CTCCGACACAATCGATAACGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCACCGGA 1860046 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | |||| | || ||| || ||||||||||| | ||||| || |||||| Sbjct 1860047 TCAGCAGCGTTTGATCTTCGCCGGTAAACAACTCGAAGACGGCAGAACTCTCGCCGATTA 1860106 Query 24167 TAACATTCAAAAAGAATCTAC 24187 || || || |||||||| || Sbjct 1860107 CAATATCCAGAAAGAATCGAC 1860127 >seq7180 Length=1421306 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| ||||||| ||| | || || | || || ||| || | Sbjct 1038825 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACAATCACGCTAGAGGTGGAGTCCTCC 1038884 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || ||| |||||| || || ||||| || ||||| ||||| Sbjct 1038885 GACACAATCGATAACGTGAAAGCCAAGATTCAAGATAAGGAAGGGATTCCTCCGGATCAG 1038944 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || ||| || ||||||||||| | ||||| | || |||||| || Sbjct 1038945 CAACGTTTGATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACCCTCGCCGATTACAAT 1039004 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || |||||||| || | ||||| ||| Sbjct 1039005 ATCCAGAAAGAATCGACTCTGCATTTGGTG 1039034 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| ||||||| || |||| ||| | || || ||| | Sbjct 1038593 CAATATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACGATCACCTTGGAGGTGGAGTC 1038652 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||||||||| | || || || || ||||| || ||||| ||||| || Sbjct 1038653 CTCTGACACCATCGACAACGTGAAGGCCAAAATCCAAGACAAGGAGGGCATTCCTCCGGA 1038712 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||||||| | |||| | || ||| || || |||||||| | ||||| | || ||| || Sbjct 1038713 TCAACAGCGTTTGATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTCGCCGACTA 1038772 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| ||||| || || || Sbjct 1038773 CAACATCCAAAAGGAGTCCAC 1038793 >seq21796 Length=372373 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | || ||| | || || ||| | Sbjct 99089 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 99148 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| ||||||||||| || || || || ||| Sbjct 99149 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAAGAAGGTATCCCACCAGACCAA 99208 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | ||||| || || ||||||| | ||| | | ||||| ||| Sbjct 99209 CAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACAAC 99268 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || |||||||||||||| | || || ||| Sbjct 99269 ATCCAAAAAGAATCTACCCTCCACTTGGTG 99298 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || ||||| | || ||| | || |||||| | | Sbjct 98633 ATGCAAATCTTTGTTAAGACCTTGACGGGAAAGACAATCACCCTTGAGGTCGAGAGCTCC 98692 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || |||||| |||||||| || || ||||| |||||| Sbjct 98693 GACACCATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAGGGTATCCCTCCAGATCAA 98752 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | || ||||| || || |||| | | | | | ||||| ||| Sbjct 98753 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTGCTGATTACAAC 98812 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || || || || ||||||| || Sbjct 98813 ATCCAGAAGGAGTCCACTCTTCATTTGGT 98841 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | || ||||| | || ||| | || || ||| | Sbjct 98860 AATGCAAATCTTTGTTAAGACTCTGACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTC 98919 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | || || |||||| |||||||| || || || || ||||| Sbjct 98920 TGACACCATTGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGATCA 98979 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||| || || | | || ||||| || ||||||| | ||| | | ||||| || Sbjct 98980 ACAGAGGCTCATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGAACCTTGGCTGATTACAA 99039 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| |||||||||||||| Sbjct 99040 CATCCAAAAAGAATCTAC 99057 >seq25741 Length=849835 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | || ||| | || || ||| | Sbjct 274578 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 274637 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| ||||||||||| || || || || ||| Sbjct 274638 GACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA 274697 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || || || || ||||||| | ||| | | ||||| ||| Sbjct 274698 CAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACAAC 274757 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||||||||| | || || ||| Sbjct 274758 ATCCAGAAAGAATCTACCCTCCACTTGGTG 274787 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | || ||| | || || ||| | Sbjct 296636 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 296577 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| ||||||||||| || || || || ||| Sbjct 296576 GACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA 296517 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || || || || ||||||| | ||| | | ||||| ||| Sbjct 296516 CAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACAAC 296457 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||||||||| | || || ||| Sbjct 296456 ATCCAGAAAGAATCTACCCTCCACTTGGTG 296427 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | || ||| | || || ||| | Sbjct 274350 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAGAGCTCT 274409 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| ||||||||||| || || || || ||| Sbjct 274410 GACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAA 274469 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || || || || || |||| | | | | | |||||| ||| Sbjct 274470 CAGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGTACCCTTGCCGATTACAAC 274529 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| ||||| || || Sbjct 274530 ATTCAGAAAGAGTCCAC 274546 >seq3517 Length=1029689 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||||||| | || || | || || || | Sbjct 706666 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAAACCATAACTTTGGAGGTTGAAAGCTCT 706725 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| ||||| || || || || || Sbjct 706726 GACACCATCGATAATGTGAAGGCAAAGATACAGGACAAGGAAGGTATTCCACCAGACCAG 706785 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || ||||| || ||||||| | | | | |||||||| Sbjct 706786 CAGAGGCTTATTTTTGCAGGGAAGCAGCTGGAAGATGGGCGTACCCTGGCTGATTATAAT 706845 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 || || || ||||| || | ||||| ||||| || Sbjct 706846 ATCCAGAAGGAATCCACTCTGCATTTGGTGTTGAG 706880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429762194341350