Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq7180 122 7e-23 seq22486 104 2e-17 seq30922 102 7e-17 seq21071 98.7 8e-16 seq31939 95.1 1e-14 seq21796 95.1 1e-14 seq3517 93.3 3e-14 seq22595 82.4 6e-11 >seq7180 Length=1421306 Score = 122 bits (134), Expect = 7e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||||||||||||||| |||||||||||||| | |||| || |||| || | ||| Sbjct 1038799 TGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCGAGCTGT 1038740 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || | |||||||| ||| ||| | |||||| ||||| |||| Sbjct 1038739 TTTCCGGCGAAGATCAAACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCTTGGATTTTG 1038680 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| || |||| |||| |||||| || || || || Sbjct 1038679 GCCTTCACGTTGTCGATGGTGTCAGAGGACTCCACCTCCAAGGTGATCGTCTTGCCAGTT 1038620 Query 16913 AGCGTTTTGACAAAAATCTGCATTTTG 16939 || ||||| || || |||||||| ||| Sbjct 1038619 AGGGTTTTCACGAAGATCTGCATATTG 1038593 >seq22486 Length=836894 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || |||||||||||||| || |||||||||||||| | ||| | ||||||||| || Sbjct 787434 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 787375 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| |||||| ||| | ||| || ||||| || || Sbjct 787374 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 787315 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | ||||| | |||| |||| ||||| ||||| || | Sbjct 787314 GC--CTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAACGTGATCGTTTTACCCG 787257 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || |||||||| Sbjct 787256 TTAGGGTTTTCACGAAGATCTGCAT 787232 >seq30922 Length=1454590 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || |||| ||||| || |||||||| || ||||||||||| | Sbjct 136731 ACCCCCCACGAAGACGCAACACCAAGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAG 136672 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | | ||| | | ||||| | |||||||| ||| ||||||||| ||| |||||| | Sbjct 136671 CGAGGGTCCTTCCATCCTCTAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCCGGTG 136612 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | || || ||||| || | | |||||| | | | | |||||| | |||| Sbjct 136611 GGATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCGGAGCTCTCCA 136552 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || || || || || || ||||| || |||||||| Sbjct 136551 CCTCGAGGGTAATAGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCAT 136503 >seq21071 Length=2748687 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| |||||||| |||||||||||||| | |||| | ||||| | ||| Sbjct 2709183 TGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTTCGACCATCCTCAAGCTGT 2709242 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || |||||| | ||||| | ||| ||||| || | || || ||||| || || Sbjct 2709243 TTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTA 2709302 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | |||||| || |||| || | ||||||||| || |||| Sbjct 2709303 GCT--TTCACGTTATCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTACCGG 2709360 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||| || || |||||||| Sbjct 2709361 TCAAAGTTTTCACGAAGATCTGCAT 2709385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||||| |||| ||||| || || ||||| || ||||| || || || Sbjct 2708703 CCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCTGCA 2708762 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | || || | ||||| || ||| | ||||||| ||| ||||| || Sbjct 2708763 AGGGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGG 2708822 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || ||| | ||| ||||| | | | | || || |||| Sbjct 2708823 ATACCCTCCTTATCTTGAATCTTGGCT--TTCACATTGTCTATGGTATCTGAACTCTCCA 2708880 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| ||||| |||| || ||||| ||||||||||| Sbjct 2708881 CCTCCAAGGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 2708929 >seq31939 Length=7596472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | ||||||||| || Sbjct 357455 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 357396 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| |||||| ||| | ||| || ||||| || || Sbjct 357395 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 357336 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | ||||| | |||| || | |||||| || || || | Sbjct 357335 GC--CTTCACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATCGTCTTACCCG 357278 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTGTAGC 16943 | || ||||| || || |||||||| ||| || Sbjct 357277 TTAGGGTTTTCACGAAGATCTGCATCGTGTCGC 357245 >seq21796 Length=372373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | ||||||| ||| || ||||||||||| || |||||||| || || Sbjct 98859 CCACCACGTAGACGGAGTACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCA 98800 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || ||| | || |||| |||||| || ||| Sbjct 98799 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGATCTGGAGGG 98740 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| ||| | ||| || | | | | |||||| | ||| Sbjct 98739 ATACCCTCTTTGTCCTGAATCTTAGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCGACC 98680 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || ||||| |||| || || ||||| || ||||| Sbjct 98679 TCAAGGGTGATTGTCTTTCCCGTCAAGGTCTTAACAAAGATTTGCAT 98633 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || || || || ||||| |||||||| || || Sbjct 99088 CCCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGC 99029 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || |||| | | || || | || || || ||| | || |||| |||||| || || Sbjct 99028 CAAGGTTCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATGAGCCTCTGTTGATCTGGTGG 98969 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||||||||| ||| | ||| || | | | | ||||| | |||| Sbjct 98968 GATACCCTCTTTGTCCTGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCAC 98909 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| || ||||||||||| || || ||||| || |||||| Sbjct 98908 CTCAAGGGTGATTGTCTTTCCGGTCAGAGTCTTAACAAAGATTTGCATT 98860 >seq3517 Length=1029689 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || |||||||| || || | |||| | | ||| Sbjct 702020 AGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATCC 701961 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||| || ||| |||| |||| ||| || || || | |||||||||||| Sbjct 701960 TCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGGATGCCCTCTTTGTCC 701901 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| || ||| || | |||||||| Sbjct 701900 TGGATCTTGGC--CTTAACATTATCAATGGTGTCCGAGGATTCCACCTCAAGGGTGATGG 701843 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| || |||||||| || ||||| Sbjct 701842 TCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 701809 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || |||| ||||| || || ||||| || ||||| ||||| || Sbjct 702263 CCACCACGAAGCCGCAACACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAGTCAGCA 702204 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || || | ||||| || ||| | ||||||| ||||||||| || Sbjct 702203 AGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGG 702144 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| ||| | ||| ||||| | | | | || || |||| Sbjct 702143 ATACCTTCCTTGTCCTGAATCTTAGCT--TTCACATTGTCTATGGTATCTGAACTCTCCA 702086 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| |||||||||| ||||| || ||||||||||| Sbjct 702085 CCTCCAAGGTTATGGTCTTTCCGGTCAAAGTTTTAACGAAAATCTGCAT 702037 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || |||||||| || || | |||| | | ||| Sbjct 706421 AGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATCC 706362 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||| || ||| |||| |||| ||| || || || | |||||||||||| Sbjct 706361 TCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGGATGCCCTCTTTGTCC 706302 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| || ||| || | |||||||| Sbjct 706301 TGGATCTTGGC--CTTAACATTATCAATGGTGTCCGAGGATTCCACCTCAAGGGTGATGG 706244 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| || |||||||| || ||||| Sbjct 706243 TCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 706210 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || |||| ||||| || || ||||| || ||||| ||||| || Sbjct 706664 CCACCACGAAGCCGCAACACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAGTCAGCA 706605 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || || | ||||| || ||| | ||||||| ||||||||| || Sbjct 706604 AGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGG 706545 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| ||| | ||| ||||| | | | | || || |||| Sbjct 706544 ATACCTTCCTTGTCCTGAATCTTAGCT--TTCACATTGTCTATGGTATCTGAACTCTCCA 706487 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| |||||||||| ||||| || ||||||||||| Sbjct 706486 CCTCCAAGGTTATGGTCTTTCCGGTCAAAGTTTTAACGAAAATCTGCAT 706438 >seq22595 Length=1721694 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || |||||||||||||| || |||||||||||||| | ||| | ||||||||| || Sbjct 762641 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 762700 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || || || | || || ||||| |||||| || | |||||| ||||| Sbjct 762701 TTACCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 762750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404924239378300