Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq20448 105 8e-18 seq26036 102 1e-16 seq6459 96.9 4e-15 seq27061 93.3 5e-14 seq10089 86.0 8e-12 >seq20448 Length=1126904 Score = 105 bits (116), Expect = 8e-18 Identities = 229/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| ||||| |||||||| || ||||| |||| || | ||||||||| || ||||| Sbjct 920639 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 920580 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 32778 || ||||||| |||||||| || ||||||||||| | |||| || ||| || |||| Sbjct 920579 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGA 920521 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTA 32838 | ||||| || || || || || | || | ||| | | | | ||| | Sbjct 920520 ATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGAGGCATCGA 920461 Query 32839 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 32898 |||| | ||||| | ||| || || | | || || || || | ||| || || Sbjct 920460 TCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAA 920401 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 32958 | ||| |||||||| | ||||| | || || || | | || || ||||||| Sbjct 920400 ACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTT 920341 Query 32959 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 | || || || ||||| ||||| ||||| || |||||||| Sbjct 920340 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAA 920301 >seq26036 Length=1795852 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 || |||| ||| |||||||| | || | || || | ||| | || | |||||| || Sbjct 175813 CCTTTTGCCTCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGG 175872 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 || ||| ||||||||||| ||||| ||||| ||||| || || | |||||||| | Sbjct 175873 AACAATGCCATTGGATGTCCCATTTGTCCCACGAATATAACTACCTGTAGCACGAATGTC 175932 Query 63337 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 | ||| || | ||| ||||| || || ||| ||| | || || || || || Sbjct 175933 ATGAATAGAGACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGT 175992 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATG 63430 ||||| || ||||||||||||||||| ||||| Sbjct 175993 TTCATATATCCCCTCTATACTATCATCTTTCATG 176026 >seq6459 Length=330141 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || ||| ||||||||||||||||| || ||||| | | ||| | |||||| || || || Sbjct 144173 CAGACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGT 144114 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 ||| || ||||| || || || ||||| ||||| || || | |||| || |||||| | Sbjct 144113 GAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAG-CGCAGAAGCTTCCAGAGA 144055 Query 32776 AGAAAATTCCTT 32787 ||||||| |||| Sbjct 144054 AGAAAATACCTT 144043 >seq27061 Length=934220 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| |||||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 848516 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCC 848575 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 |||||| || ||||| ||||| ||||| || || | |||||||| | | ||| || Sbjct 848576 ATTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGA 848635 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||| | || || || || || || || || Sbjct 848636 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATAT 848695 Query 63406 GCCCTCTATACTATCATCCATCAT 63429 ||||||||||||||||| |||| Sbjct 848696 CCCCTCTATACTATCATCTTTCAT 848719 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | || ||||| || |||||||||||| || ||| | | | | Sbjct 848890 GTTCCAGCATTGAAAAGTGTCGGAGATGCATGAGTAAACCATCGTTGAGACATCATGTGG 848949 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | || || || ||||| || | ||| ||||| || || || || | ||| || Sbjct 848950 TATGTTTTGATGGCAGAATCTATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 849008 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| ||||| ||||| || | ||| | | ||||| | ||| || | || | Sbjct 849009 CATGTGTTGAGGCCTTTCCACAACCTTCCCTTGAACCTTCAAGAGGTAAGACCTCTCAAG 849068 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| || |||||||| | || |||||||| || || || || Sbjct 849069 GGTTTTGAATCCAAAATAATCATAGTCAAAGTCTCTGTCATAGATTAT 849116 >seq10089 Length=680993 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | ||| || | || | || | || |||||||| |||||| Sbjct 148211 TCCCCCTTGATCAACATAGCGAGCAGTATCGTTGAACACACGCAGCATTGGAACAATACC 148270 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || ||| || ||||| |||||||||| || || Sbjct 148271 ATTTGATGTCCCATTTGTGCCACGGATGTAACTTCCTGTGGCACGAATGTTGTGAACACT 148330 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| || | ||| || || || || ||||| || Sbjct 148331 AACACCAATTCCTCCAGCTGATTTGCTAATGACTGCACACTCCTTCAAAGTGTCATATAT 148390 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||||||||||||||||| ||||| Sbjct 148391 TCCCTCTATACTATCATCTTTCATG 148415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633369280332000