Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq32773 100 6e-16 seq6459 100 6e-16 seq3485 100 6e-16 seq14952 91.5 3e-13 seq5084 89.7 1e-12 seq33106 87.8 4e-12 seq29304 87.8 4e-12 seq18940 87.8 4e-12 seq17371 87.8 4e-12 seq16820 87.8 4e-12 seq14540 87.8 4e-12 seq9527 87.8 4e-12 seq7508 87.8 4e-12 seq7170 87.8 4e-12 seq6775 87.8 4e-12 seq6656 87.8 4e-12 seq258 87.8 4e-12 seq31707 86.0 1e-11 seq29785 86.0 1e-11 seq21071 86.0 1e-11 seq19546 86.0 1e-11 seq7942 86.0 1e-11 >seq32773 Length=474742 Score = 100 bits (110), Expect = 6e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || |||||| |||| |||||||||||||| || | ||||| || || | || Sbjct 296019 TCCATTCCCTCTATGGTCGATGGCCTCAAGCCTGGCCAAAGGAAGATTCTTTTCTGCTCA 296078 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| ||| || | ||||||| || || | |||||| |||||| || || || Sbjct 296079 TTTAAGAAGAAGTTGTTCAAAGAAATAAAAGTAGGCCAGTTTATTGGTTACGTTTCTGAG 296138 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 |||| ||||| || |||||||| ||||| | | ||| | ||||||||| Sbjct 296139 CACTCTGCGTACCACCATGGTGAGCAAAGTCTAGCTAGCACAATTATTAATATGGCACAG 296198 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 || | |||||| || |||||||| || | || || |||||||| |||||| ||||| Sbjct 296199 GATTTTGTGGGTAGCAACAACATCAATCTTCTTAAACCAAACGGTCAATTTGGTACTCGT 296258 >seq6459 Length=330141 Score = 100 bits (110), Expect = 6e-16 Identities = 267/403 (66%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| ||| || || |||||||| | ||||| ||||| Sbjct 144436 TCGAAGAAGTTGGTCTTTCCCTGCAGCGAAATCAGCTCCATCCAATCGAACGGGTTCTGA 144377 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| ||| ||||| || | | | || |||||||||||||| | Sbjct 144376 ACATTGTACACCTTCCCGCACCCAAGCGCCCCCAGCAACCGATCTGCCACAAACTCAATG 144317 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA-CAAGGAATTGCCTCACAGAT 251741 || || | ||||| ||| |||||| || | || ||| || || | || || || | Sbjct 144316 TATTGACTCATCAAATCACCGTTCATCCCCACCA-ACGCGCAGGGCAGCGCGTCGCACAC 144258 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || ||| || | | || || ||| |||||| || |||| | || | || Sbjct 144257 AAACTCCCGCTCAATATCCACGGCGTCCCTCACAATCTCCCTCACGCGCTCCTCGGTGAG 144198 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 ||| | | |||| ||||| || || | ||| ||| | | || || || ||||||| Sbjct 144197 CTTCTGCCTCAGCAGAGAGTAGAGCAGACACGCGAAATCGCAG-TGTAGCCCTTCGTCGC 144139 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 || |||| ||||| || | | || || ||||| | || || || ||||||||| Sbjct 144138 GAGAAATGAGTTCGTTTGAGAAAGTGAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGA 144079 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 |||| ||||| ||| ||||||||| | | ||| | ||||| Sbjct 144078 AGATAGCGCAGAAGCTTCCAGAGAAGAAAATACCTTTAACACA 144036 >seq3485 Length=314948 Score = 100 bits (110), Expect = 6e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || |||||| |||| |||||||||||||| || | ||||| || || | || Sbjct 176593 TCCATTCCCTCTATGGTCGATGGCCTCAAGCCTGGTCAAAGGAAGATTCTTTTCTGCTCA 176652 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| ||| || |||||||||| || | |||||| |||||| || || || Sbjct 176653 TTTAAGAAGAAGTTGTCCAAAGAAATTAAAGTAGGCCAGTTTATTGGTTACGTGTCTGAG 176712 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 |||| ||||| || |||||||| ||||| || | ||| | ||||||||| Sbjct 176713 CACTCTGCTTACCACCATGGTGAGCAAAGTCTAGCTAGTACAATTATTAATATGGCACAG 176772 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 || | |||||| || |||||||| || | || || ||||| || |||||| ||||| Sbjct 176773 GATTTTGTGGGTAGCAACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGT 176832 >seq14952 Length=1323296 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 47987 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 48046 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 48047 AGCCCCAC 48054 >seq5084 Length=1311173 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 1217392 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1217333 Query 142562 GCCCCAC 142568 ||||||| Sbjct 1217332 GCCCCAC 1217326 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 323624 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 323565 Query 142564 CCCAC 142568 ||||| Sbjct 323564 CCCAC 323560 >seq33106 Length=308776 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 262062 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 262121 Query 142563 CCCCAC 142568 |||||| Sbjct 262122 CCCCAC 262127 >seq29304 Length=420863 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 268677 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 268736 Query 142563 CCCCAC 142568 |||||| Sbjct 268737 CCCCAC 268742 >seq18940 Length=535554 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 179784 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 179725 Query 142563 CCCCAC 142568 |||||| Sbjct 179724 CCCCAC 179719 >seq17371 Length=701839 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 522833 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 522774 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| |||| ||||| Sbjct 522773 CCCACGGTGGGC-GAAGT 522757 >seq16820 Length=555522 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 185543 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 185602 Query 142563 CCCCAC 142568 |||||| Sbjct 185603 CCCCAC 185608 >seq14540 Length=473692 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 176081 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 176140 Query 142563 CCCCAC 142568 |||||| Sbjct 176141 CCCCAC 176146 >seq9527 Length=3028458 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 101996 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 101937 Query 142563 CCCCAC 142568 |||||| Sbjct 101936 CCCCAC 101931 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 993559 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 993500 Query 142563 CCCCAC 142568 |||||| Sbjct 993499 CCCCAC 993494 >seq7508 Length=3270101 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2874950 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2874891 Query 142563 CCCCAC 142568 |||||| Sbjct 2874890 CCCCAC 2874885 >seq7170 Length=1369746 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 89669 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 89610 Query 142563 CCCCAC 142568 |||||| Sbjct 89609 CCCCAC 89604 >seq6775 Length=777482 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 472473 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 472532 Query 142563 CCCCAC 142568 |||||| Sbjct 472533 CCCCAC 472538 >seq6656 Length=5245635 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3329576 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3329635 Query 142563 CCCCAC 142568 |||||| Sbjct 3329636 CCCCAC 3329641 >seq258 Length=535298 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 390955 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 390896 Query 142563 CCCCAC 142568 |||||| Sbjct 390895 CCCCAC 390890 >seq31707 Length=1678040 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 608023 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 608082 Query 142564 CCCAC 142568 ||||| Sbjct 608083 CCCAC 608087 >seq29785 Length=155966 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 136658 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 136599 Query 142564 CCCAC 142568 ||||| Sbjct 136598 CCCAC 136594 >seq21071 Length=2748687 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 93308 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 93249 Query 142564 CCCAC 142568 ||||| Sbjct 93248 CCCAC 93244 >seq19546 Length=955447 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 477882 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 477941 Query 142564 CCCAC 142568 ||||| Sbjct 477942 CCCAC 477946 >seq7942 Length=1623846 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 742439 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 742498 Query 142564 CCCAC 142568 ||||| Sbjct 742499 CCCAC 742503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027399978995970