Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3517 98.7 8e-16 seq21071 95.1 1e-14 seq17534 91.5 1e-13 seq22595 87.8 1e-12 seq7180 82.4 6e-11 >seq3517 Length=1029689 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/240 (69%), Gaps = 18/240 (8%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || ||||| || ||| ||||||||||| |||||||| Sbjct 707124 GAAACCACCACGAAGGCGGAGGACAAGATGCAGGGTGGATTCCTTCTGAATATTGTAATC 707065 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 ||||| || | || ||||||||||| || ||||| || || | ||||||||| Sbjct 707064 CGCCAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 707005 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076 || | | ||| |||||| | | | ||||||| ||||| ||||| | | || Sbjct 707004 TGGAATACCCTCCTTGTCC-TGAATCTTTGCTT--------TCACATTATCAATGGTATC 706954 Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||| ||| ||||| || || || || || || |||||||| |||||||| Sbjct 706953 AGAGCTTTCCACCTCCAAGGTTATGGTCTTCCCTGTCAGAGTCTTCACAAATATTTGCAT 706894 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 33898 AAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCT 33957 ||||| || | || || || || ||||| | ||| ||||||||||| ||||||||| Sbjct 702494 AAACCACCGCGAAGGCGAAGGACGAGATGCAAGGTGGATTCCTTCTGAATATTGTAATCT 702435 Query 33958 GCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 ||||| || | || |||| |||||| || ||||| || || | ||||||||| Sbjct 702434 GCCAAGGTACGACCATCTTCCAGTTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCAGGT 702375 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCG 34077 || | || ||| |||||| ||| ||| ||| | | | |||||| | ||| Sbjct 702374 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTATCAATGGTATCAGAACTTTCA 702315 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||||| |||||||| || | || || |||||||||||||| Sbjct 702314 ACCTCCAAAGTTATGGTTTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 702265 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||||| || ||||||| ||||| ||| |||||||||||||||||||| || Sbjct 702036 ACCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGC 701977 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || | || || | ||| || |||||||| ||||| | ||||||||| || Sbjct 701976 AAGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGG 701917 Query 34020 CACGCTCTCTTTGTCC 34035 | || |||||||||| Sbjct 701916 GATGCCCTCTTTGTCC 701901 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||||| || ||||||| ||||| ||| |||||||||||||||||||| || Sbjct 706437 ACCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGC 706378 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || | || || | ||| || |||||||| ||||| | ||||||||| || Sbjct 706377 AAGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGG 706318 Query 34020 CACGCTCTCTTTGTCC 34035 | || |||||||||| Sbjct 706317 GATGCCCTCTTTGTCC 706302 >seq21071 Length=2748687 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | |||| || ||||| ||| || ||| ||||||||| || || ||||| || Sbjct 2708474 ACCTCCACGAAGCCTCAACACCAAATGCAGAGTGGACTCCTTCTGGATATTATAATCAGC 2708533 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || | || |||| ||||| || ||||| || || | |||||| || | Sbjct 2708534 -AAGAGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTG 2708592 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | |||||||||| || ||| ||| | | | | |||||| | ||| Sbjct 2708593 GAATCCCCTCTTTGTCCTGTATCTTTGCCTTCACGTTATCGATGGTATCAGAACTTTCAA 2708652 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||||||||||||||||| | || || |||||||||||||| Sbjct 2708653 CTTCTAAAGTTATTGTTTTTCCGGTCAAAGTCTTAACAAAGATTTGCAT 2708701 >seq17534 Length=674752 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || || || || || ||| ||||||||| |||||||| || || || || || Sbjct 416374 AGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCG 416316 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| |||| ||||| ||||| || |||||||||||||||||| ||| | || ||| Sbjct 416315 CCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATGCCCTC 416256 Query 34029 TTTGTCC 34035 |||||| Sbjct 416255 CTTGTCC 416249 >seq22595 Length=1721694 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||||||| ||||||||| |||||||| || || | || Sbjct 762626 AGGCGGAGGACGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 762685 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||| ||||| || |||||||||||||| ||| ||| | || ||| Sbjct 762686 CCGTCCTCCAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 762745 Query 34030 TTGTCC 34035 |||||| Sbjct 762746 TTGTCC 762751 >seq7180 Length=1421306 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 |||| || || || ||||||||| |||||||||||| || |||||||| || || || Sbjct 1039498 AGCCTGAGGACAAGGTGAAGCGTGGACTCCTTCTGAATATTATAATCTGC-AAGCGTGCG 1039440 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | ||||| || || || || || |||||||||||| || | | ||| Sbjct 1039439 TCCATCCTCAAGCTGCTTCCCTGCGAAGATAAGACGCTGCTGATCCGGTGGAATCCCCTC 1039380 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 || ||| ||| ||| ||| | | | | |||||| | || || | || Sbjct 1039379 CTTATCCTGAATCTTTGCCTTCACGTTATCGATCGTATCAGAACTCTCCACCTCCAGAGT 1039320 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||||||||||| || || ||||| ||||| ||||| Sbjct 1039319 AATCGTTTTTCCGGTGAGCGTCTTCACGAAGATCTGCAT 1039281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396901883802340