Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq17846 132 1e-25 seq20448 102 2e-16 seq6459 93.3 9e-14 seq25784 89.7 1e-12 >seq17846 Length=8990 Score = 132 bits (146), Expect = 1e-25 Identities = 274/403 (68%), Gaps = 11/403 (3%) Strand=Plus/Plus Query 306503 AATTAGCCAGCAATTGCTTCGTATCCTTTGGAAAGCAATAAGCTCCGTAACCGAACGATG 306562 ||||||| || ||||| || ||||||||||| || ||||| | || |||||||| |||| Sbjct 4460 AATTAGCAAGTAATTGTTTAGTATCCTTTGGTAAACAATAGCCACCATAACCGAAGGATG 4519 Query 306563 GATTCGAATATCCCTGGCCAATTCGAGGTTCTAGAGTAACACCATCGATGATTTCTTTCG 306622 |||| || | ||||| || | || ||| || || || || || | | | Sbjct 4520 GATTATTGTAATGGTTACCAATACGTTGATCCAGACATACCCCTTCAATAATCTGCCTAG 4579 Query 306623 CATTCATATCATGAGACATTGCGAATGTATCTAGTTCGTTGAAGTATGCAACTCGCATTG 306682 || | |||| | ||| | |||||||||||||||| ||||||| ||||| | Sbjct 4580 TATCTAAATCAAAGGTTTGTGCATAAATATCTAGTTCGTTGAAAAATGCAACACGCATAG 4639 Query 306683 CAAGATACGTGTTAGAGAATAGTTTGACGGCCTCGGCTTCG--CGAGTTCCCATCGTCAG 306740 | | ||| || || | |||| ||||| || || ||||| ||||| | | || Sbjct 4640 CTAAATATGTATTTGCAAATAATTTGATTGCTTCCGCTTCTGTCGAGT--CAGTAAACAA 4697 Query 306741 AATAGGGGCAAGTGGAGTTTTA---GAACCTTCAACGAGAAGGTTTGCGAACTTAAGTGC 306797 || ||| | | ||||| | ||||||| || | |||||| || | | || Sbjct 4698 AACAGGACTATCTT---TTTTAATTGCGCCTTCAATTAGCATGTTTGCAAATTGTTGAGC 4754 Query 306798 ACTAGGAGAATCATCTCCTACGATGATACGGGATGGATAGAGATTATCATACAAGGCTCT 306857 || || | || ||||| || ||||| |||||||| |||||||||| | ||| | Sbjct 4755 ACGCTCTGACTTCTCACCTACAATAATACGCGATGGATAAAGATTATCATGTAGCGCTTT 4814 Query 306858 ACCTTCACGCAGAAATTCTGGGGAGAAAATGATATTTT-TGTA 306899 ||||||||||| ||||| || |||||||| ||||||| |||| Sbjct 4815 ACCTTCACGCAAGAATTCAGGAGAGAAAATAATATTTTCTGTA 4857 >seq20448 Length=1126904 Score = 102 bits (112), Expect = 2e-16 Identities = 292/444 (66%), Gaps = 4/444 (1%) Strand=Plus/Plus Query 243284 AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGA 243343 |||| || || ||||| ||||| || | | ||||| || || || | || ||||| | Sbjct 920473 AATCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGCGTCGAGGGAATATTCTTCTCCGGAA 920532 Query 243344 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 243403 | |||||||| || |||||||| ||| || | ||||| || ||| | || | Sbjct 920533 GCTTCTGCGCGATATTTTGGCTCAAGAAGCGTGGGTTAATGCCGGGGCTCACCTTCTCCA 920592 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 |||| ||||| || || ||||| |||||| | |||| ||| || |||| || Sbjct 920593 ACGAACTCATCTCGCGAGATGAGGGGCTTCACTGCGACTTCGCGTGT-CTCTTGTACTCG 920651 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGA 243521 ||| ||| ||||| | | | || || | | || | || || || || Sbjct 920652 CTTCTCAGGAAGAAGCTTAG-TGAGGAGCGCGTGAGGGAGATTGTGCGTGACGCGGTGGA 920710 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581 | || | ||| || | |||||||| |||| || | | | || |||||| || Sbjct 920711 GATTGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGTGCGTTGGTGGGGATGAACGGGGA 920770 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 | ||| | | ||| || || || || || || || | | |||||||| | || Sbjct 920771 GTTGATGAGTCGGTATATTGAGTTTGTTGCGGATCGGTTGCTGGATGCGCTTGGGTGTGG 920830 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| |||||| | |||| ||||||| | |||||||| ||||||||||| ||||| Sbjct 920831 GAAGGTGTACGGTGCTCAGAATCCCTTTGATTGGATGGAGCTTATTTCGCTTCAGGGGAA 920890 Query 243702 AACTAACTTCTTCGAAAAGCGTGT 243725 |||||||||||| || ||||| || Sbjct 920891 AACTAACTTCTTTGAGAAGCGCGT 920914 >seq6459 Length=330141 Score = 93.3 bits (102), Expect = 9e-14 Identities = 280/426 (66%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 243316 TGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 243375 || ||| |||||||| | || || || || |||||||| ||||| ||||| || | Sbjct 144036 TGTGTTAAAGGTATTTTCTTCTCTGGAAGCTTCTGCGCTATCTTCTGGCTCAAAAAACGA 144095 Query 243376 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435 || | ||||| || ||| | | || ||||| |||| ||||||||| || || ||| Sbjct 144096 GGACTCATGCCGGGGCTCACTTTCTCAAACGAACTCATTTCTCGCGACGAAGGGCTACAC 144155 Query 243436 CAACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCT-ACCATTCGAAACG- 243492 | |||| ||| || | || || ||| | | ||||| ||| | | || Sbjct 144156 TGCGATTTCGCGTGT-CTGCTCTACTCTCTGCTGAGGCAGAAGCTCACCGA--GGAGCGC 144212 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || | | || | | || || || || | || ||| || | |||||||| | Sbjct 144213 GTGAGGGAGATTGTGAGGGACGCCGTGGATATTGAGCGGGAGTTTGTGTGCGACGCGCTG 144272 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||| | | | || |||||| ||| | ||| | || ||||| || || || || Sbjct 144273 CCCTGCGCGTTGGTGGGGATGAACGGTGATTTGATGAGTCAATACATTGAGTTTGTGGCA 144332 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 || || | | |||||||| | | ||| |||||||| ||||||| || | Sbjct 144333 GATCGGTTGCTGGGGGCGCTTGGGTGCGGGAAGGTGTACAATGTTCAGAACCCGTTCGAT 144392 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGAT 243732 | |||||||| |||||||| || || || || ||||||||||| ||||| ||| | || Sbjct 144393 TGGATGGAGCTGATTTCGCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAG 144452 Query 243733 TATCAA 243738 |||||| Sbjct 144453 TATCAA 144458 >seq25784 Length=99802 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 243541 TGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATC 243600 |||||||| |||| ||| | | | || |||||| ||| | ||| | |||||||| Sbjct 38439 TGCGACGCGCTTCCCTGCGCGTTGGTGGGGATGAACGGTGATTTGATGAGCCAGTACATT 38380 Query 243601 GAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAG 243660 ||||| || || || || | | ||||| || | | ||| |||||||| || Sbjct 38379 GAATTTGTTGCGGATCGGTTGCTGGGTGCGCTAGGGTGCGGGAAGGTGTACAATGTTCAG 38320 Query 243661 AACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 || || || | | |||||||| ||||| || || ||||| || ||||||||||| ||| Sbjct 38319 AATCCGTTCGATTGGATGGAGCTGATTTCTCTGCAGGGGAAGACCAACTTCTTCGAGAAG 38260 Query 243721 CGTGTCAGTGATTATCA 243737 || ||| | || ||||| Sbjct 38259 CGCGTCGGGGAATATCA 38243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102411286339500