Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq15063 199 1e-46 >seq15063 Length=3774 Score = 199 bits (220), Expect = 1e-46 Identities = 294/415 (71%), Gaps = 15/415 (4%) Strand=Plus/Plus Query 51871 CTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTTGGTCAGAACGTTAA 51930 ||||| |||||||| ||| ||| ||| || ||||| ||||| ||||||||| || || Sbjct 2125 CTTTTGCCAAACCAAAAATGACCCATTGCTTGAGCCGATGTTTTTTGGTCAGCCTGTCAA 2184 Query 51931 CGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTAATTGAGAAACAATT 51990 || || || || |||||||| || | | | |||||| |||| ||||| || ||||| Sbjct 2185 TGTGGCACGTTACGACCAACAAAAATTCCCTGTTTTCGAGCAGTTGATTGAAAAGCAATT 2244 Query 51991 GTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGTATTGATTATCAGAA 52050 ||| || || ||||| || ||||| | ||||||||| | |||||| | |||| | | Sbjct 2245 GTCGTTTTTTTGGCGTCCAGAAGAAATTGACGTTTCCAAAGACCGTTTGGATTTT----A 2300 Query 52051 GCTACCTGCAA----ACGAACAACACATTTTCACCAGTAATCTTCGTTATCAGATTCTTC 52106 || || || | | ||||| || || ||| ||||| || || || | | | Sbjct 2301 GCAACTTGTCAGTGCATGAACAGCATATCTTCTTAAGTAACCTAAAGTACCAAACCTTGC 2360 Query 52107 TTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTGAGCATTCCTG 52166 |||| || ||||| || ||| | ||||| | || | || || ||| ||||||| Sbjct 2361 TTGATTCGATTCAAGGTCGTAGCCCCAATGCCGTGCTACTGCC--TCG-----ATTCCTG 2413 Query 52167 AATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCACGTTCTTATA 52226 | || || || ||||||||||| ||||| || || ||||| || ||||| ||| |||| Sbjct 2414 AGTTAGAAACCTGGATTGAAACTTGGTCATTTTCTGAGACCATCCATTCTCGTAGCTATA 2473 Query 52227 CCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGATGAAATCGT 52281 |||| || |||||||| | || | |||||||||| | || ||||| ||||| Sbjct 2474 CCCATATTATTCGTAACGTGGTCAATGACCCAAGCAAAGTATTCGATGATATCGT 2528 Score = 179 bits (198), Expect = 1e-40 Identities = 321/458 (70%), Gaps = 17/458 (4%) Strand=Plus/Plus Query 52481 TTTGCTTGCTCATTTGCCTTCGCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATT 52540 |||||||| ||||||||||| || || || || | |||||||| |||||||| || || Sbjct 2725 TTTGCTTGTTCATTTGCCTTTGCTGAGCGCAAACTGATGGAAGGTAATGCCAAAATCATC 2784 Query 52541 CGCTTAATTGCACGAGATGAAGCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTT 52600 | ||||| || || ||||| |||||| | | || || ||||| ||| | || || Sbjct 2785 AAAATGATTGCCCGTGACGAAGCGCTTCATCTAAACGGCACCCAGCATATGATTAA-TTT 2843 Query 52601 CTTGCAA-GTGGAAAAGATGACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGA 52659 ||||| || ||||||||||| || |||| ||||| || || |||| | || Sbjct 2844 GATGCAATCGGGTAAAGATGACCCTGACATGGTCGAAATCGCCCAAGATTGCCAAC-AGC 2902 Query 52660 ATGCCA--GAAATTGTTCGAAGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTG 52717 | |||| |||||| ||| |||| || ||| ||||||| || | ||||| | || ||| Sbjct 2903 AAGCCATTGAAATT-TTCAAAGACGCGGCTGAACAAGAAAAAGCATGGGCAAAATACTTG 2961 Query 52718 TTCAAAGATGGCTCTATGATTGGCTTAAACAAGCAAAT-TCTATGCG-GATATGTGGAAT 52775 || ||||||||||| ||||||||||| | | | |||| ||| | | |||||| || | Sbjct 2962 TTTAAAGATGGCTCAATGATTGGCTTGA--ATGAAAATATCTTGGTGCAATATGTCGAGT 3019 Query 52776 ATATCACGAATATTCGTATGCAAGCAGTTGGATTAGATGCTCCATTCAAAGGTGCAACTA 52835 | || || ||| | || ||| | || |||| ||| | ||| || ||| | Sbjct 3020 ACATTACCAATCTACGCATGGATGCGATTGGCTTACCGCCGATATTAAA------AAC-A 3072 Query 52836 ACCCGATTCCGTGGATTAATGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGG 52895 |||| ||||| ||||||||||| |||||| || || || || || || || || | Sbjct 3073 ACCCAATTCCATGGATTAATGCTTGGTTGTCCTCAGACAACGTGCAAGTCGCGCCCCAAG 3132 Query 52896 AAACGGAGATTAGTTCCTACCTGGTCGGGCAAATTGAC 52933 | | || || | || ||| | ||||| ||||||||| Sbjct 3133 AGTCAGAAATCACCTCTTACTTAGTCGGTCAAATTGAC 3170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169331675028980