Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq20448 138 1e-27 seq1145 113 5e-20 seq14584 111 2e-19 seq3485 89.7 6e-13 >seq20448 Length=1126904 Score = 138 bits (152), Expect = 1e-27 Identities = 386/580 (67%), Gaps = 17/580 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCA 125816 ||| |||||||| |||||||| |||||||| || ||||| | |||| | || ||||| Sbjct 920924 GTACTCCCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTG-AAGCGAAATAAGCTCCA 920866 Query 125817 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTG-TTGGCAC-CCCAATCTGTTTGAGGAG 125874 | ||||||| || |||| ||| || | || ||| ||||| | | || | Sbjct 920865 TCCAATCAAAGGGATTCT--GAGCACCGTACACCTTCCCACACCCAAGCGCATCCAGCAA 920808 Query 125875 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 125934 ||||||| || ||||||| ||| | |||| ||| |||||| || | | Sbjct 920807 CCGATCCGCAACAAACTCAATATACCGACTCATCAACTCCCCGTTCATCCCCACCAACGC 920748 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 ||| || |||||||| | | ||| || ||||||| ||||| || || ||||| || | Sbjct 920747 ACACGGAAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCGTCACGCACAATCTC 920688 Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTG---AAGAGTTCCACGGCAAA 126051 | | ||| | | | | | || | | | | | ||||| |||| | || Sbjct 920687 CCTCACGCGCTCCTCACTAAGCTTCTTCCTGAGAAGCGAGTACAAGAGA--CACG-CGAA 920631 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || ||||| || || ||||||||||| || |||||| || || ||||| Sbjct 920630 GTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGCCCCGGCAT 920571 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 | || |||||||| | ||| || ||||| || || || |||||||| |||||||| Sbjct 920570 TAACCCACGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAATATTCCCTC 920511 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTT 126231 || || ||||| || | ||| ||||| || ||||| || | || | ||| Sbjct 920510 GACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGA---GGCATCGATCCAGCG 920454 Query 126232 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 126291 | |||||||| || ||||| ||| || |||| ||| | || || ||| || Sbjct 920453 GAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAAACAGACG 920394 Query 126292 CTTCTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAG 126330 || ||||||| |||| ||||||||||| | |||| ||| Sbjct 920393 ATTTTTTTCTG-TGGAGTCTTTGATGTAGGTTTCTAAGAG 920355 >seq1145 Length=872046 Score = 113 bits (124), Expect = 5e-20 Identities = 278/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 10820 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 10879 ||||| || |||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 257078 TCAAGAATGTCAACCCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 257137 Query 10880 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATA 10939 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | | Sbjct 257138 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 257194 Query 10940 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAC 10996 ||| || | || | |||| | || || || ||||||||||| | ||||| || || Sbjct 257195 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 257254 Query 10997 GGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || ||| || ||| |||| || | ||| ||||||| ||||| ||||| | Sbjct 257255 GGGGCATTCTCTTTGGC--CTTCCTGAATAAATCGCGGACTCGAGAAGCACCAACACCAA 257312 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCC 11113 ||||||| || ||||| | | | | | |||| || || ||||| | |||||| Sbjct 257313 CAAACATCTCTACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCT 257371 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCA 11173 || || || || | || |||||||| || ||||| || | ||||| |||| Sbjct 257372 GCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACCT 257431 Query 11174 CGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCAC 11229 ||| || | || ||| || | | | |||||| | ||||| || ||||| Sbjct 257432 TTTGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTAAGAAATTCCAC 257487 >seq14584 Length=1259196 Score = 111 bits (122), Expect = 2e-19 Identities = 232/338 (69%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 10820 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 10879 ||||| || |||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 1202350 TCAAGAATGTCAACTCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 1202291 Query 10880 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGG-GC-- 10936 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | || Sbjct 1202290 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCCGCCA 1202231 Query 10937 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAC 10996 || ||| | || | |||| | || || || ||||||||||| | ||||| || || Sbjct 1202230 ATTCCA---GTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 1202174 Query 10997 GGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || ||| || ||| |||| || | ||| ||||||| ||||| ||||| | Sbjct 1202173 GGAGCATTCTCTTTGGC--CTTCCTGAATAAATCACGGACTCGAGAAGCACCAACACCAA 1202116 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCC 11113 ||||||| || ||||| | | | | | |||| || || ||||| | |||||| Sbjct 1202115 CAAACATCTCTACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCT 1202057 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || || || || | || |||||||| || ||||| Sbjct 1202056 GCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGG 1202019 >seq3485 Length=314948 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 173691 CGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 173750 ||||| |||||||| || ||||||| || | ||||||||| || || |||||||| | Sbjct 173414 CGATGACAAACTCCGTGGAGAAGATGTTAGTGAGCTTGGCACCATAACCGTTGCGTCCGC 173355 Query 173751 CAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAATGTAA 173810 | | | |||||| |||||||| |||||| | || ||||||||||| || || | | Sbjct 173354 CGGTAGTCTTCTTCTCGTTGTCATTGTAGTTGCTGCTGGTGAGGAGGTGGCCGAAGATGA 173295 Query 173811 GTTCTGG 173817 |||| || Sbjct 173294 GTTCGGG 173288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597105922263600