Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq20448 125 9e-24 seq14584 105 8e-18 seq1145 105 8e-18 >seq20448 Length=1126904 Score = 125 bits (138), Expect = 9e-24 Identities = 381/579 (66%), Gaps = 15/579 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || |||||||| |||||||| || ||||| | || ||| |||||| Sbjct 920924 GTACTCCCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTGAAGCGAAATAAGCTCCAT 920865 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTG-TTGGCAC-CCCAATCTGTTTGAGGAGA 127348 ||||||| || |||| ||| || | || ||| ||||| | | || | Sbjct 920864 CCAATCAAAGGGATTCT--GAGCACCGTACACCTTCCCACACCCAAGCGCATCCAGCAAC 920807 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||||| || ||||||| ||| | |||| ||| |||||| || | | | Sbjct 920806 CGATCCGCAACAAACTCAATATACCGACTCATCAACTCCCCGTTCATCCCCACCAACGCA 920747 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || |||||||| | | ||| || ||||||| ||||| || || || || || | Sbjct 920746 CACGGAAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCGTCACGCACAATCTCC 920687 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTG---AAGAGTTCCACAGCAAAC 127525 | ||| | | | | | || | | | | | ||||| ||| || || Sbjct 920686 CTCACGCGCTCCTCACTAAGCTTCTTCCTGAGAAGCGAGTACAAGAGA--CAC-GCGAAG 920630 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| || ||||| || || ||||||||||| || |||||| || || ||||| Sbjct 920629 TCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGCCCCGGCATT 920570 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 | || |||||||| | ||| || ||||| || || || |||||||| || ||||| Sbjct 920569 AACCCACGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAATATTCCCTCG 920510 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 127705 || || ||||| || | || ||||| || ||||| || | ||| | ||| Sbjct 920509 ACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGA---GGCATCGATCCAGCGG 920453 Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCC 127765 | |||||||| || ||||| ||| ||||||| ||| | || || ||| || Sbjct 920452 AGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAAACAGACGA 920393 Query 127766 TTCTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAG 127803 || ||||||| |||| ||||||||||| | |||| ||| Sbjct 920392 TTTTTTTCTG-TGGAGTCTTTGATGTAGGTTTCTAAGAG 920355 >seq14584 Length=1259196 Score = 105 bits (116), Expect = 8e-18 Identities = 180/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 ||||| || |||| | ||| || || || ||||||| ||| || || | || || Sbjct 1202350 TCAAGAATGTCAACTCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 1202291 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGG-GC-- 12851 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | || Sbjct 1202290 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCCGCCA 1202231 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 || ||| | || | |||| | || || || |||||||| |||| ||||| || || Sbjct 1202230 ATTCCA---GTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 1202174 Query 12912 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 1202173 GGAGCATTCTCTTTGGC--CTTCCTGAATAAATCACGGACTCGAGAAGCACCAACACCAA 1202116 Query 12970 CAAACATCTCCACAAA 12985 |||||||||| ||||| Sbjct 1202115 CAAACATCTCTACAAA 1202100 >seq1145 Length=872046 Score = 105 bits (116), Expect = 8e-18 Identities = 179/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 ||||| || |||| | ||| || || || ||||||| ||| || || | || || Sbjct 257078 TCAAGAATGTCAACCCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 257137 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | | Sbjct 257138 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 257194 Query 12855 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 ||| || | || | |||| | || || || |||||||| |||| ||||| || || Sbjct 257195 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 257254 Query 12912 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 257255 GGGGCATTCTCTTTGGC--CTTCCTGAATAAATCGCGGACTCGAGAAGCACCAACACCAA 257312 Query 12970 CAAACATCTCCACAAA 12985 |||||||||| ||||| Sbjct 257313 CAAACATCTCTACAAA 257328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613252824577200