Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq20448 150 3e-31 seq6459 138 2e-27 seq25784 93.3 7e-14 >seq20448 Length=1126904 Score = 150 bits (166), Expect = 3e-31 Identities = 239/338 (71%), Gaps = 11/338 (3%) Strand=Plus/Minus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 ||||||||| || || ||||| || || || | || |||| ||| | ||| ||||||| Sbjct 920814 CCAGCAACCGATCCGCAACAAACTCAATATACCGACTCATCAACTCCCCGTTCATCCCCA 920755 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 || | | || ||||| || ||| ||||||| |||||||||| ||||| || || Sbjct 920754 CCAACGCACACGGAAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCGTCACGCA 920695 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTG--CCCAAAATGTG-GTCCTTAAACAGGA 159920 |||||| | || || || | | |||| || | | | | || ||| || Sbjct 920694 CAATCTCCCTCACGCGCTCCTCACTAAGCTTCTTCCTGAGAAGCGAGT------ACAAGA 920641 Query 159921 GGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGA 159980 | ||||| ||||||||||| || ||||| || || ||||||| |||||||| | | ||| Sbjct 920640 GACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGA 920581 Query 159981 GGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAA 160039 | |||||||| | ||||||| ||||||||||| || | |||| |||| ||| || Sbjct 920580 GCCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAG 920522 Query 160040 AAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || || ||||| ||| || || |||||||| | ||| Sbjct 920521 AATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTC 920484 >seq6459 Length=330141 Score = 138 bits (152), Expect = 2e-27 Identities = 263/384 (68%), Gaps = 10/384 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || || || ||||| | |||| ||||| Sbjct 144440 CTTCTCGAAGAAGTTGGTCTTTCCCTGCAGCGAAATCAGCTCCATCCAATCGAACGGGTT 144381 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || || | || |||| | || || ||| ||||||||| ||||||||||| || Sbjct 144380 CTGAACATTGTACACCTTCCCGCACCCAAGCGCCCCCAGCAACCGATCTGCCACAAACTC 144321 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| || |||| |||| ||| ||||||| || | ||| ||||| || | Sbjct 144320 AATGTATTGACTCATCAAATCACCGTTCATCCCCACCAACGCGCAGGGCAGCGCGTCGCA 144261 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || ||||||| |||||| || || || || ||||||||| | || || || | Sbjct 144260 CACAAACTCCCGCTCAATATCCACGGCGTCCCTCACAATCTCCCTCACGCGCTCCTCGGT 144201 Query 159889 CGGCT--TGCC-CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 ||| |||| || | || | || || ||||| || |||||||| || || Sbjct 144200 GAGCTTCTGCCTCAGCAGAGAGT------AGAGCAGACACGCGAAATCGCAGTGTAGCCC 144147 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 ||||| ||||| |||| ||||| || | |||| |||||||||| || || ||| Sbjct 144146 TTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGTGAGCCCCGGCATGAGTCCTCGTTTTTT 144087 Query 160006 GAGCCAAAAAATGGCCGCAAAAGC 160029 |||||| || || | |||| |||| Sbjct 144086 GAGCCAGAAGATAG-CGCAGAAGC 144064 >seq25784 Length=99802 Score = 93.3 bits (102), Expect = 7e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || || || ||||| | |||| || || Sbjct 38260 CTTCTCGAAGAAGTTGGTCTTCCCCTGCAGAGAAATCAGCTCCATCCAATCGAACGGATT 38319 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || || | || |||| | || || || ||||||||| || || |||||||| Sbjct 38320 CTGAACATTGTACACCTTCCCGCACCCTAGCGCACCCAGCAACCGATCCGCAACAAATTC 38379 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| | |||| |||| ||| ||||||| || | ||| ||||| || | Sbjct 38380 AATGTACTGGCTCATCAAATCACCGTTCATCCCCACCAACGCGCAGGGAAGCGCGTCGCA 38439 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT 159869 || ||||||| ||||| || ||||| || ||||||||| Sbjct 38440 CACAAACTCCCGTTCAATGTCCACCGCGTCCTTCACAATCT 38480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794825508775200