Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3517 104 2e-17 seq646 98.7 7e-16 seq21796 93.3 3e-14 seq25741 87.8 1e-12 seq21071 86.0 4e-12 >seq3517 Length=1029689 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||||| |||| ||| || || ||||||||||| |||| || |||| ||| Sbjct 706874 ACCAAATGCAGAGTGGATTCCTTCTGGATATTATAATCAGCCAGGGTACGCCCATCTTCC 706815 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 | || ||||| ||||||| | | |||||| || | || | ||||| ||||| | Sbjct 706814 AGCTGCTTCCCTGCAAAAATAAGCCTCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGT 706755 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || ||| || | | | | ||||| | |||||| || |||||||| || ||||| Sbjct 706754 ATCTTTGCCTTCACATTATCGATGGTGTCAGAGCTTTCAACCTCCAAAGTTATGGTTTTT 706695 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || ||||| || || ||||| |||||| Sbjct 706694 CCAGTCAAAGTCTTAACAAAGATTTGCATG 706665 >seq646 Length=2337744 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || ||||| |||||||| | | | | || || | |||||| ||| | || Sbjct 1860122 TTCTTTCTGGATATTGTAATCGGCGAGAGTTCTGCCGTCTTCGAGTTGTTTACCGGCGAA 1860063 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || |||||||||||||||| || | |||||| ||||| ||||| ||| | | Sbjct 1860062 GATCAAACGCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTCACGTT 1860003 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | |||||| | | || || || | ||||| |||||||| |||| ||||| || Sbjct 1860002 ATCGATTGTGTCGGAGGACTCGACCTCTAGCGTAATCGTTTTACCGGTTAGGGTTTTGAC 1859943 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 1859942 GAAGATCTGCAT 1859931 >seq21796 Length=372373 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || || || || | | | | |||| |||||||| ||||| |||| Sbjct 99735 TCTTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAT 99676 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | |||||| || | || | || || ||||| |||||| ||| | | Sbjct 99675 ATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATTTTTGCTTTGACATTA 99616 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | |||||||| |||||| || ||||| ||||| || || || || ||||| || || Sbjct 99615 TCGATTGTGTCTGAGCTTTCAACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACA 99556 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 99555 AAGATCTGCAT 99545 >seq25741 Length=849835 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || || || || | | | | |||| |||| ||| ||||| |||| Sbjct 275224 TCTTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGTTGCTTCCCAGCAAAG 275165 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | ||| || || | ||| | ||||| ||||| ||||||| || | | Sbjct 275164 ATCAACCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGTATTTTTGCCTTGACATTA 275105 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | |||||||| ||||| || ||||| || || ||||| || || ||||| || || Sbjct 275104 TCAATTGTGTCTGAACTTTCAACCTCCAAGGTGATAGTTTTCCCTGTCAAAGTCTTCACA 275045 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 275044 AAGATCTGCAT 275034 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || || || || | | | | |||| |||| ||| ||||| |||| Sbjct 295990 TCTTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGTTGCTTCCCAGCAAAG 296049 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | ||| || || | ||| | ||||| ||||| ||||||| || | | Sbjct 296050 ATCAACCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGTATTTTTGCCTTGACATTA 296109 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | |||||||| ||||| || ||||| || || ||||| || || ||||| || || Sbjct 296110 TCAATTGTGTCTGAACTTTCAACCTCCAAGGTGATAGTTTTCCCTGTCAAAGTCTTCACA 296169 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 296170 AAGATCTGCAT 296180 >seq21071 Length=2748687 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||||| |||| || || || ||||||||||| || | | || |||| ||| Sbjct 2708493 ACCAAATGCAGAGTGGACTCCTTCTGGATATTATAATCAGCAAGAGTACGACCATCTTCC 2708552 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 | || ||||| |||| || | | |||||| || | || | || |||||||| | Sbjct 2708553 AGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCTTTGTCCTGT 2708612 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || ||| || | | | | || || | ||||| || || ||||| |||||||| Sbjct 2708613 ATCTTTGCCTTCACGTTATCGATGGTATCAGAACTTTCAACTTCTAAAGTTATTGTTTTT 2708672 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || ||||| || || ||||| |||||| Sbjct 2708673 CCGGTCAAAGTCTTAACAAAGATTTGCATG 2708702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347229172582610